Lampe, Robert
Marchetti, Adrian
2018-05-31
<p>Data sets for:</p>
<p><strong>Lampe RH</strong>, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Till CP, Brzezinski MA, Bargu S, Thamatrakoln K, Kuzminov FI, Twining BS, and Marchetti A. (2018) <a href="http://dx.doi.org/10.1111/1462-2920.14361">Divergent gene expression among phytoplankton taxa in response to upwelling</a>. <em>Environmental Microbiology</em> 20, 3069-3082.</p>
<p>File descriptions:</p>
<ul>
<li>contigs.fa - final assembly</li>
<li>counts_KO.tab - Raw counts for each contig with taxonomic annotation and KEGG Ortholog (KO) annotation.</li>
<li>counts_MO.tab - Raw counts for each contig with taxonomic annotation and KEGG Modules (MO) annotation.</li>
<li>counts_kegghit.tab - Raw counts for each contig with taxonomic annotation and a KEGG gene.</li>
</ul>
<p>Counts column names correspond to the following treatments:</p>
<pre>------------------------
Treatment | Sample IDs
------------------------
T0 | Q45
T72-C | Q46
T72-Fe | Q50
T72-DFB | Q53
T120-C | Q55, Q56, Q57
T120-Fe | Q58, Q59, Q60
T120-DFB | Q61, Q62, Q63
T120-FeDFB | Q64, Q65, Q66
</pre>
<p>All counts files are tab delimited.</p>
https://doi.org/10.5281/zenodo.1256894
oai:zenodo.org:1256894
Zenodo
https://doi.org/10.5281/zenodo.1256893
info:eu-repo/semantics/openAccess
Creative Commons Attribution Share Alike 4.0 International
https://creativecommons.org/licenses/by-sa/4.0/legalcode
Assembly, annotation, and read counts for a simulated upwelling experiment
info:eu-repo/semantics/other