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Published April 30, 2018 | Version Version 1.1
Software Open

Software Robust thalamic nuclei segmentation method based on local diffusion magnetic resonance properties

  • 1. Radiology Department, CIBM, Lausanne University
  • 2. Radiolo
  • 3. Radiology Department and Service of General Psychiatry, Department of Psychiatry, Lausanne University Hospital and University of Lausanne
  • 4. Radio
  • 5. Radiol

Description

This software represents a working copy of the code developed for the automatic segmentation of seven anatomic thalamic subparts exploring MRI diffusion-based properties, according to the method published in Brain Structure and Function in 2017 entitled as "Robust thalamic nuclei segmentation method based on local diffusion magnetic resonance properties" by G. Battistella, E. Najdenovska, P. Maeder, N. Ghazaleh, A. Daducci, J.-P. Thiran, S. Jacquemont, C. Tuleasca, M. Levivier, M. Bach Cuadra and E. Fornari. Moreover we provide a testing dataset of five healthy subjects. Please read the README.txt file for detailed information.

Notes

This work is also supported by interdisciplinary fund (2016) of the Faculty of Biology and Medicine of the Lausanne University.

Files

FreeSurferTools.zip

Files (96.1 MB)

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Additional details

Related works

Funding

Advanced high-field MR imaging and quantitative image analysis for segmentation of the thalamic nuclei 205321_157040
Swiss National Science Foundation