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Training material for Calling variants in non-diploid systems

Nekrutenko, Anton


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  <dc:creator>Nekrutenko, Anton</dc:creator>
  <dc:date>2018-05-22</dc:date>
  <dc:description>The majority of life on Earth is non-diploid and represented by prokaryotes, viruses and their derivatives such as our own mitochondria or plant’s chloroplasts. In non-diploid systems allele frequencies can range anywhere between 0 and 100% and there could be multiple (not just two) alleles per locus. The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between sequencing noise (abundant in all NGS platforms) and true low frequency variants. </dc:description>
  <dc:identifier>https://zenodo.org/record/1251112</dc:identifier>
  <dc:identifier>10.5281/zenodo.1251112</dc:identifier>
  <dc:identifier>oai:zenodo.org:1251112</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.1251111</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/galaxy-training</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:title>Training material for Calling variants in non-diploid systems</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
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