Dataset Open Access

Training material for Calling variants in non-diploid systems

Nekrutenko, Anton


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/c7f28da4-3925-41c6-8bd1-81d6e6441dc2/raw_child-ds-1.fq"
      }, 
      "checksum": "md5:16be65077fc89def93c858e04867007d", 
      "bucket": "c7f28da4-3925-41c6-8bd1-81d6e6441dc2", 
      "key": "raw_child-ds-1.fq", 
      "type": "fq", 
      "size": 14271295
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c7f28da4-3925-41c6-8bd1-81d6e6441dc2/raw_child-ds-2.fq"
      }, 
      "checksum": "md5:f166c47284989e33ccb3100a6b434a99", 
      "bucket": "c7f28da4-3925-41c6-8bd1-81d6e6441dc2", 
      "key": "raw_child-ds-2.fq", 
      "type": "fq", 
      "size": 14273951
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c7f28da4-3925-41c6-8bd1-81d6e6441dc2/raw_mother-ds-1.fq"
      }, 
      "checksum": "md5:3ada6611f24a35649b680e1646cd9fd0", 
      "bucket": "c7f28da4-3925-41c6-8bd1-81d6e6441dc2", 
      "key": "raw_mother-ds-1.fq", 
      "type": "fq", 
      "size": 30424987
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c7f28da4-3925-41c6-8bd1-81d6e6441dc2/raw_mother-ds-2.fq"
      }, 
      "checksum": "md5:a5da6da47dde792de1709619a4f63384", 
      "bucket": "c7f28da4-3925-41c6-8bd1-81d6e6441dc2", 
      "key": "raw_mother-ds-2.fq", 
      "type": "fq", 
      "size": 30424987
    }
  ], 
  "owners": [
    46768
  ], 
  "doi": "10.5281/zenodo.1251112", 
  "stats": {
    "version_unique_downloads": 611.0, 
    "unique_views": 9136.0, 
    "views": 9955.0, 
    "version_views": 9940.0, 
    "unique_downloads": 611.0, 
    "version_unique_views": 9121.0, 
    "volume": 55121134976.0, 
    "version_downloads": 2444.0, 
    "downloads": 2444.0, 
    "version_volume": 55121134976.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.1251112", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.1251111", 
    "bucket": "https://zenodo.org/api/files/c7f28da4-3925-41c6-8bd1-81d6e6441dc2", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.1251111.svg", 
    "html": "https://zenodo.org/record/1251112", 
    "latest_html": "https://zenodo.org/record/1251112", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.1251112.svg", 
    "latest": "https://zenodo.org/api/records/1251112"
  }, 
  "conceptdoi": "10.5281/zenodo.1251111", 
  "created": "2018-05-22T14:03:56.381622+00:00", 
  "updated": "2020-01-24T19:25:51.622218+00:00", 
  "conceptrecid": "1251111", 
  "revision": 8, 
  "id": 1251112, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.1251112", 
    "description": "<p>The majority of life on Earth is non-diploid and represented by prokaryotes, viruses and their derivatives such as our own mitochondria or plant&rsquo;s chloroplasts. In non-diploid systems allele frequencies can range anywhere between 0 and 100% and there could be multiple (not just two) alleles per locus. The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between sequencing noise (abundant in all NGS platforms) and true low frequency variants.&nbsp;</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "Training material for Calling variants in non-diploid systems", 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "1251111"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "1251112"
          }
        }
      ]
    }, 
    "communities": [
      {
        "id": "galaxy-training"
      }
    ], 
    "publication_date": "2018-05-22", 
    "creators": [
      {
        "name": "Nekrutenko, Anton"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.1251111", 
        "relation": "isVersionOf"
      }
    ]
  }
}
9,940
2,444
views
downloads
All versions This version
Views 9,9409,955
Downloads 2,4442,444
Data volume 55.1 GB55.1 GB
Unique views 9,1219,136
Unique downloads 611611

Share

Cite as