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Training material for Calling variants in non-diploid systems

Nekrutenko, Anton


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  <identifier identifierType="DOI">10.5281/zenodo.1251112</identifier>
  <creators>
    <creator>
      <creatorName>Nekrutenko, Anton</creatorName>
      <givenName>Anton</givenName>
      <familyName>Nekrutenko</familyName>
    </creator>
  </creators>
  <titles>
    <title>Training material for Calling variants in non-diploid systems</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <dates>
    <date dateType="Issued">2018-05-22</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
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    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1251112</alternateIdentifier>
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    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1251111</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/galaxy-training</relatedIdentifier>
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  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;The majority of life on Earth is non-diploid and represented by prokaryotes, viruses and their derivatives such as our own mitochondria or plant&amp;rsquo;s chloroplasts. In non-diploid systems allele frequencies can range anywhere between 0 and 100% and there could be multiple (not just two) alleles per locus. The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between sequencing noise (abundant in all NGS platforms) and true low frequency variants.&amp;nbsp;&lt;/p&gt;</description>
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