There is a newer version of this record available.

Dataset Open Access

Simulated Human gut metagenomic samples to benchmark mOTUs v2

Milanese, Alessio; Mende, Daniel; Zeller, Georg; Sunagawa, Shinichi


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/gold_standard.tar.gz"
      }, 
      "checksum": "md5:dff56e8b4319bc31cdf5032864ba4240", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "gold_standard.tar.gz", 
      "type": "gz", 
      "size": 9303
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/profiled_samples.tar.gz"
      }, 
      "checksum": "md5:8753ab212fdec81785c017ad274c0833", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "profiled_samples.tar.gz", 
      "type": "gz", 
      "size": 498281
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/README.txt"
      }, 
      "checksum": "md5:e65e5318e74971fa10b4ca176cf7404a", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "README.txt", 
      "type": "txt", 
      "size": 3521
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/sample1.tar.gz"
      }, 
      "checksum": "md5:4f7ef126fe74b655c8b903ef26f2038e", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "sample1.tar.gz", 
      "type": "gz", 
      "size": 18279415795
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/sample2.tar.gz"
      }, 
      "checksum": "md5:5a65a89d31686073b73e09308d19951f", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "sample2.tar.gz", 
      "type": "gz", 
      "size": 18637989771
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/sample3.tar.gz"
      }, 
      "checksum": "md5:dbb4f79ceae95a3997324ca0a525b23b", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "sample3.tar.gz", 
      "type": "gz", 
      "size": 18176718313
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/sample4.tar.gz"
      }, 
      "checksum": "md5:87f556fe9547e1369d137f1f1da43c1a", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "sample4.tar.gz", 
      "type": "gz", 
      "size": 18999610667
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f/sample5.tar.gz"
      }, 
      "checksum": "md5:e1399b43219c0ef4cd44d69e90d60b4a", 
      "bucket": "c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
      "key": "sample5.tar.gz", 
      "type": "gz", 
      "size": 18508783272
    }
  ], 
  "owners": [
    46202
  ], 
  "doi": "10.5281/zenodo.1244651", 
  "stats": {
    "version_unique_downloads": 682.0, 
    "unique_views": 174.0, 
    "views": 202.0, 
    "version_views": 1169.0, 
    "unique_downloads": 43.0, 
    "version_unique_views": 952.0, 
    "volume": 388922004418.0, 
    "version_downloads": 1634.0, 
    "downloads": 61.0, 
    "version_volume": 27116655713910.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.1244651", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.1244650", 
    "bucket": "https://zenodo.org/api/files/c66505f3-4b95-4cf6-af88-fa6fdcd37f2f", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.1244650.svg", 
    "html": "https://zenodo.org/record/1244651", 
    "latest_html": "https://zenodo.org/record/1473645", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.1244651.svg", 
    "latest": "https://zenodo.org/api/records/1473645"
  }, 
  "conceptdoi": "10.5281/zenodo.1244650", 
  "created": "2018-06-15T12:30:57.297231+00:00", 
  "updated": "2020-01-24T19:26:24.549724+00:00", 
  "conceptrecid": "1244650", 
  "revision": 9, 
  "id": 1244651, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.1244651", 
    "description": "<p>We simulated five human gut metagenomic samples to assess the taxonomic quantification accuracy of the mOTUs tool (<a href=\"http://motu-tool.org/\">link</a>). In this directory you can find the metagenomic samples, the gold standard (used to produce them) and the profiles obtained with three metagenomic profiler tools.</p>\n\n<p>Check README.txt for more information.</p>\n\n<p>NOTE: Version1 is obsolete, the files used in the paper are in Version2.</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "Simulated Human gut metagenomic samples to benchmark mOTUs v2", 
    "relations": {
      "version": [
        {
          "count": 2, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "1244650"
          }, 
          "is_last": false, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "1473645"
          }
        }
      ]
    }, 
    "communities": [
      {
        "id": "zenodo"
      }
    ], 
    "publication_date": "2018-06-15", 
    "creators": [
      {
        "orcid": "0000-0002-7050-2239", 
        "affiliation": "European Molecular Biology Laboratory", 
        "name": "Milanese, Alessio"
      }, 
      {
        "affiliation": "University of Hawai'i at Manoa", 
        "name": "Mende, Daniel"
      }, 
      {
        "affiliation": "European Molecular Biology Laboratory", 
        "name": "Zeller, Georg"
      }, 
      {
        "affiliation": "ETH Zurich", 
        "name": "Sunagawa, Shinichi"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.1244650", 
        "relation": "isVersionOf"
      }
    ]
  }
}
1,169
1,634
views
downloads
All versions This version
Views 1,169202
Downloads 1,63461
Data volume 27.1 TB388.9 GB
Unique views 952174
Unique downloads 68243

Share

Cite as