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Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Alla Mikheenko; Andrey Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey Gurevich


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{
  "DOI": "10.5281/zenodo.1240963", 
  "abstract": "<p>Supplementary data for&nbsp;A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich.&nbsp;Versatile genome assembly evaluation with QUAST-LG.&nbsp;ISMB 2018 PROCEEDINGS (<em>Bioinformatics </em>journal)</p>\n\n<p>Reference genomes of</p>\n\n<ol>\n\t<li><em>Saccharomyces cerevisiae </em>(yeast)&nbsp;version&nbsp;R64-1-1&nbsp;</li>\n\t<li><em>Caenorhabditis&nbsp;elegans&nbsp;</em>(worm)&nbsp;version&nbsp;WBcel235</li>\n\t<li><em>Drosophila&nbsp;melanogaster&nbsp;</em>(fruit fly) version&nbsp;BDGP6</li>\n</ol>\n\n<p>And<em> de novo</em> genome assemblies of</p>\n\n<ol>\n\t<li>Yeast_PB (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and&nbsp;PacBio SMRT)</li>\n\t<li>Yeast_NP (<em>S. cerevisiae</em>, genome size: 12.1 Mb):&nbsp;Canu, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and Oxford Nanopore)</li>\n\t<li>Worm_PB (<em>C. elegans</em>, genome size:&nbsp;100.3 Mb):&nbsp;Canu, FALCON, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and&nbsp;PacBio SMRT)</li>\n\t<li>Fly_MP (<em>D. melanogaster</em>,&nbsp;genome size:&nbsp;137.6 Mb): ABySS2, MaSuRCA,&nbsp;Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends&nbsp;and&nbsp;mate-pairs)</li>\n\t<li>Human_MP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends&nbsp;and&nbsp;mate-pairs)</li>\n\t<li>Human_NP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends&nbsp;and&nbsp;Oxford Nanopore)</li>\n</ol>\n\n<p>Each pack (items 1-4) is accompanied with the upper bound&nbsp;assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to <em>de novo</em> assemblies of the human datasets please visit&nbsp;http://cab.spbu.ru/software/quast-lg/ or write to&nbsp;<em>quast.support@cab.spbu.ru.</em></p>", 
  "author": [
    {
      "family": "Alla Mikheenko"
    }, 
    {
      "family": "Andrey Prjibelski"
    }, 
    {
      "family": "Vladislav Saveliev"
    }, 
    {
      "family": "Dmitry Antipov"
    }, 
    {
      "family": "Alexey Gurevich"
    }
  ], 
  "container_title": "Bioinformatics", 
  "id": "1240963", 
  "issued": {
    "date-parts": [
      [
        2018, 
        4, 
        2
      ]
    ]
  }, 
  "language": "eng", 
  "publisher": "Zenodo", 
  "title": "Genome assemblies for \"Versatile genome assembly evaluation with QUAST-LG\"", 
  "type": "dataset", 
  "version": "3.0.0"
}
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