Dataset Open Access

Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Alla Mikheenko; Andrey Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey Gurevich

Supplementary data for A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich. Versatile genome assembly evaluation with QUAST-LG. ISMB 2018 PROCEEDINGS (Bioinformatics journal)

Reference genomes of

  1. Saccharomyces cerevisiae (yeast) version R64-1-1 
  2. Caenorhabditis elegans (worm) version WBcel235
  3. Drosophila melanogaster (fruit fly) version BDGP6

And de novo genome assemblies of

  1. Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)
  2. Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and Oxford Nanopore)
  3. Worm_PB (C. elegans, genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)
  4. Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)
  5. Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)
  6. Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopore)

Each pack (items 1-4) is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to de novo assemblies of the human datasets please visit http://cab.spbu.ru/software/quast-lg/ or write to quast.support@cab.spbu.ru.

Files (2.3 GB)
Name Size
Caenorhabditis_elegans.WBcel235.dna.toplevel.fa.gz
md5:96014f288660d4c3ecbd249fb3ae0ebc
30.3 MB Download
Drosophila_melanogaster.BDGP6.dna.toplevel.fa.gz
md5:f4b1e3100ae1254dc9bd80f79b2545ae
41.8 MB Download
Fly_MP.tar.gz
md5:507c6e8c6388032fd4ba6d714f24255f
283.6 MB Download
Human_MP_UpperBound.fasta.gz
md5:0199249addb8276c09a759118669c5d3
874.1 MB Download
Human_NP_UpperBound.fasta.gz
md5:bb75d730fec1992b3b99505e70d61c38
874.9 MB Download
Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz
md5:c654c7b8205baeb752e1256364c0eaf7
3.8 MB Download
Worm_PB.tar.gz
md5:579b8bb6fc88023d90f7ccc6b135104f
182.6 MB Download
Yeast_NP.tar.gz
md5:61503101061704dbb4c1826b415224cd
18.5 MB Download
Yeast_PB.tar.gz
md5:d486cbc79a1df206b21d78fdeef2bc0a
22.3 MB Download
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