Software Open Access

New fortran programs for genetic studies with structured antedependence models

David, Ingrid


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="999" ind1="C" ind2="5">
    <subfield code="x">David, I., Ruesche, J., Drouilhet, L., Garreau, H., &amp; Gilbert, H. (2015). Genetic modeling of feed intake. Journal of animal science, 93(3), 965-977</subfield>
  </datafield>
  <datafield tag="999" ind1="C" ind2="5">
    <subfield code="x">David, I., Garreau, H., Balmisse, E., Billon, Y., &amp; Canario, L. (2017). Multiple-trait structured antedependence model to study the relationship between litter size and birth weight in pigs and rabbits. Genetics Selection Evolution, 49(1), 11.</subfield>
  </datafield>
  <datafield tag="999" ind1="C" ind2="5">
    <subfield code="x">David I., Sanchez J-P., Piles M., (Submitted 2017). Longitudinal analysis of direct and indirect effects on the average daily gain in growing rabbits using a structured antedependence model .</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">structured antedependence model, genetic</subfield>
  </datafield>
  <controlfield tag="005">20190410042148.0</controlfield>
  <controlfield tag="001">1228058</controlfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">676800</subfield>
    <subfield code="z">md5:6d89c1f0185034164df91ecbd9a97ee2</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/dataex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">170640</subfield>
    <subfield code="z">md5:3e5701ff79304b0a8701384509b4d445</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/dataex2</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">1392</subfield>
    <subfield code="z">md5:3fec889d4aaf540d75f5442ba54a6cd7</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/ex1.as</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">415</subfield>
    <subfield code="z">md5:442d6aa440f92405d43e724b20d08fac</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/ex2.as</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">5323</subfield>
    <subfield code="z">md5:c9045264aab2f94f434c7ac2074460f6</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/matrixSAD.f90</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">131</subfield>
    <subfield code="z">md5:0a145de269cefa43a7abfa353fbee7e3</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/para2ex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">224</subfield>
    <subfield code="z">md5:2e90d9503e402fa33a1ad98cba673e4a</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/para2ex2</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">131</subfield>
    <subfield code="z">md5:0a145de269cefa43a7abfa353fbee7e3</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/para3ex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">248</subfield>
    <subfield code="z">md5:0a9103a5f7967411a954730c8805df31</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/para4ex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">131</subfield>
    <subfield code="z">md5:0a145de269cefa43a7abfa353fbee7e3</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/paraex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">225</subfield>
    <subfield code="z">md5:c23bfe12e790cea1d46af36024f5e81f</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/paraex2</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">184830</subfield>
    <subfield code="z">md5:d46ded76d48f45cbd2e8aa75af32beb6</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/pedex1</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">6634</subfield>
    <subfield code="z">md5:cc91726b550ec97be07633ff6ade4e43</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/pedex2</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">38672</subfield>
    <subfield code="z">md5:37e163c026005e4e5dd1812370fe4d9c</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/sadmultiuni4.f90</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">38672</subfield>
    <subfield code="z">md5:5a6087f0fbd4f2ba19992a4277fe0e7a</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/sadmultiuni.f90</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">1103198</subfield>
    <subfield code="z">md5:61000c3bef55de3a58a7efc83fde2445</subfield>
    <subfield code="u">https://zenodo.org/record/1228058/files/SADmultiuni_tutorial.pdf</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2017-09-19</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">software</subfield>
    <subfield code="o">oai:zenodo.org:1228058</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">INRA</subfield>
    <subfield code="a">David, Ingrid</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">New fortran programs for genetic studies with structured antedependence models</subfield>
  </datafield>
  <datafield tag="536" ind1=" " ind2=" ">
    <subfield code="c">633531</subfield>
    <subfield code="a">Adapting the feed, the animal and the feeding techniques to improve the efficiency and sustainability of monogastric livestock production systems</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">http://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;This project provides fortran scripts to apply, with&amp;nbsp;ASReml, structured antedependence models (SAD) for single trait analysis, multiple-trait analysis or single trait analysis with correlated random effects.&lt;/p&gt;

&lt;p&gt;It contains:&lt;/p&gt;

&lt;p&gt;- 3 fortran programs: 1) sadmultiuni.f90 to run SAD models with versions 1 to 3 of ASReml 2)&amp;nbsp;sadmultiuni4.f90 to run SAD models in ASReml4 3) matrixSAD.f90 to calculate variance-covariance matrix using SAD parameters.&lt;/p&gt;

&lt;p&gt;- 1 tutorial (sadmultiuni_tutorial.pdf)&lt;/p&gt;

&lt;p&gt;- 2 sets of examples&amp;nbsp;(ex1.as, ex2.as and their data, pedigree and parameters files)&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.896376</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.1228058</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">software</subfield>
  </datafield>
</record>
93
105
views
downloads
All versions This version
Views 9378
Downloads 10599
Data volume 45.2 MB40.0 MB
Unique views 7665
Unique downloads 4237

Share

Cite as