Software Open Access

New fortran programs for genetic studies with structured antedependence models

David, Ingrid

This project provides fortran scripts to apply, with ASReml, structured antedependence models (SAD) for single trait analysis, multiple-trait analysis or single trait analysis with correlated random effects.

It contains:

- 3 fortran programs: 1) sadmultiuni.f90 to run SAD models with versions 1 to 3 of ASReml 2) sadmultiuni4.f90 to run SAD models in ASReml4 3) matrixSAD.f90 to calculate variance-covariance matrix using SAD parameters.

- 1 tutorial (sadmultiuni_tutorial.pdf)

- 2 sets of examples (ex1.as, ex2.as and their data, pedigree and parameters files)

 

Files (2.2 MB)
Name Size
dataex1
md5:6d89c1f0185034164df91ecbd9a97ee2
676.8 kB Download
dataex2
md5:3e5701ff79304b0a8701384509b4d445
170.6 kB Download
ex1.as
md5:3fec889d4aaf540d75f5442ba54a6cd7
1.4 kB Download
ex2.as
md5:442d6aa440f92405d43e724b20d08fac
415 Bytes Download
matrixSAD.f90
md5:c9045264aab2f94f434c7ac2074460f6
5.3 kB Download
para2ex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
para2ex2
md5:2e90d9503e402fa33a1ad98cba673e4a
224 Bytes Download
para3ex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
para4ex1
md5:0a9103a5f7967411a954730c8805df31
248 Bytes Download
paraex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
paraex2
md5:c23bfe12e790cea1d46af36024f5e81f
225 Bytes Download
pedex1
md5:d46ded76d48f45cbd2e8aa75af32beb6
184.8 kB Download
pedex2
md5:cc91726b550ec97be07633ff6ade4e43
6.6 kB Download
sadmultiuni.f90
md5:5a6087f0fbd4f2ba19992a4277fe0e7a
38.7 kB Download
sadmultiuni4.f90
md5:37e163c026005e4e5dd1812370fe4d9c
38.7 kB Download
SADmultiuni_tutorial.pdf
md5:61000c3bef55de3a58a7efc83fde2445
1.1 MB Download
  • David I., Sanchez J-P., Piles M., (Submitted 2017). Longitudinal analysis of direct and indirect effects on the average daily gain in growing rabbits using a structured antedependence model .

  • David, I., Garreau, H., Balmisse, E., Billon, Y., & Canario, L. (2017). Multiple-trait structured antedependence model to study the relationship between litter size and birth weight in pigs and rabbits. Genetics Selection Evolution, 49(1), 11.

  • David, I., Ruesche, J., Drouilhet, L., Garreau, H., & Gilbert, H. (2015). Genetic modeling of feed intake. Journal of animal science, 93(3), 965-977

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