April 18, 2018 Software Open Access

Lj Miranda

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{
  "description": "Minor Release (v0.1.1)\n<p>This is a minor release of <code>gym-lattice</code>, an HP 2D-Lattice environment with a Gym-like API for the protein folding problem. This release focuses on fixing the <code>compute_free_energy()</code> function and improving the documentation in the <code>README</code>.</p>\nFixing the <code>compute_free_energy()</code> function\n<p>As it turns out, the previous implementation of the free energy computation includes the adjacent H-H pairs even if they are neighbors in the sequence. The standard computation should not include that. This release fixes the problem and updated the expected values during testing.</p>\nBetter documentation in the <code>README</code>.\n<p>Instead of manually building assets in a graphical software, all images are now created using LaTeX. We use the <code>standalone</code> package to generate PNG files from our TeX files. This gives a cleaner version of our images, and hopefully a better representation of our problem space.</p>", 
  "license": "", 
  "creator": [
    {
      "affiliation": "Waseda University", 
      "@type": "Person", 
      "name": "Lj Miranda"
    }
  ], 
  "url": "https://zenodo.org/record/1220163", 
  "codeRepository": "https://github.com/ljvmiranda921/gym-lattice/tree/v0.1.1", 
  "datePublished": "2018-04-18", 
  "version": "v0.1.1", 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.1220163", 
  "@id": "https://doi.org/10.5281/zenodo.1220163", 
  "@type": "SoftwareSourceCode", 
  "name": "ljvmiranda921/gym-lattice: Minor Release (v0.1.1)"
}