April 18, 2018 Software Open Access

Lj Miranda

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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.1220163", 
  "title": "ljvmiranda921/gym-lattice: Minor Release (v0.1.1)", 
  "issued": {
    "date-parts": [
      [
        2018, 
        4, 
        18
      ]
    ]
  }, 
  "abstract": "Minor Release (v0.1.1)\n<p>This is a minor release of <code>gym-lattice</code>, an HP 2D-Lattice environment with a Gym-like API for the protein folding problem. This release focuses on fixing the <code>compute_free_energy()</code> function and improving the documentation in the <code>README</code>.</p>\nFixing the <code>compute_free_energy()</code> function\n<p>As it turns out, the previous implementation of the free energy computation includes the adjacent H-H pairs even if they are neighbors in the sequence. The standard computation should not include that. This release fixes the problem and updated the expected values during testing.</p>\nBetter documentation in the <code>README</code>.\n<p>Instead of manually building assets in a graphical software, all images are now created using LaTeX. We use the <code>standalone</code> package to generate PNG files from our TeX files. This gives a cleaner version of our images, and hopefully a better representation of our problem space.</p>", 
  "author": [
    {
      "family": "Lj Miranda"
    }
  ], 
  "version": "v0.1.1", 
  "type": "article", 
  "id": "1220163"
}