Dataset Open Access

Br soaked lysozyme datasets collected with the mixed scheme implemented in HITO in the ZOO system

Kunio Hirata


JSON Export

{
  "conceptdoi": "10.5281/zenodo.1208077", 
  "conceptrecid": "1208077", 
  "created": "2019-01-07T02:01:03.470519+00:00", 
  "doi": "10.5281/zenodo.1208078", 
  "files": [
    {
      "bucket": "f3b11bc9-7d77-4a1c-9c93-1986cfc3fb95", 
      "checksum": "md5:d237f22cd25fe3ca8723c670394ee1a3", 
      "key": "hito-CPS1991-05.tgz", 
      "links": {
        "self": "https://zenodo.org/api/files/f3b11bc9-7d77-4a1c-9c93-1986cfc3fb95/hito-CPS1991-05.tgz"
      }, 
      "size": 40654331336, 
      "type": "tgz"
    }
  ], 
  "id": 1208078, 
  "links": {
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.1208078.svg", 
    "bucket": "https://zenodo.org/api/files/f3b11bc9-7d77-4a1c-9c93-1986cfc3fb95", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.1208077.svg", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.1208077", 
    "doi": "https://doi.org/10.5281/zenodo.1208078", 
    "html": "https://zenodo.org/record/1208078", 
    "latest": "https://zenodo.org/api/records/1208078", 
    "latest_html": "https://zenodo.org/record/1208078"
  }, 
  "metadata": {
    "access_right": "open", 
    "access_right_category": "success", 
    "communities": [
      {
        "id": "zenodo"
      }
    ], 
    "creators": [
      {
        "affiliation": "RIKEN/SPring-8 Center", 
        "name": "Kunio Hirata", 
        "orcid": "0000-0002-1491-6509"
      }
    ], 
    "description": "<p>Bromide soaked lysozyme crystals were used as standard crystals for evaluation of the automated data collection, ZOO, developed at SPring-8 BL32XU.</p>\n\n<p>Crystals those sizes ranged 10-100 &micro;m were cryocooled together in the same cryoloop and processed &#39;mixed scheme&#39; implemented in the ZOO system.</p>\n\n<p>Beam size : 10(H) x 15(V) &micro;m<sup>2</sup></p>\n\n<p>After 2D raster scanning the loop, HITO detects 1&nbsp;crystals for full rotation helical, 7 crystals for partial helical, and 62 crystals for multiple small wedge schemes, respectively. A full rotation helical, partial helical and small wedge datasets contain total oscillation of 60 deg, 40 deg and 5 deg. respectively.&nbsp;</p>\n\n<p>The crystals belong&nbsp;to space group P4<sub>3</sub>2<sub>1</sub>2 with mean unit cell parameters a=b=79.1, c=37.5.</p>\n\n<p>Data was processed up to&nbsp;1.50 &Aring; resolution in the published result (Hirata et al. in preparation) using KAMO.</p>\n\n<p><em><strong>&lt;Available data&gt;</strong></em></p>\n\n<ul>\n\t<li># Beamline: &nbsp; &nbsp; SPring-8 BL32XU</li>\n\t<li># wavelength&nbsp; &nbsp; 0.9000 A</li>\n\t<li># Detector :&nbsp; &nbsp; EIGER X 9M</li>\n\t<li># ZOO mode: mixed scheme (HITO)</li>\n\t<li>#####################################################</li>\n\t<li># Multiple small wedge datasets</li>\n\t<li># &#39;CPS1991-05-multi_master.h5&#39; manages 62 datasets</li>\n\t<li>#####################################################</li>\n\t<li># 5.0 deg. / datasets</li>\n\t<li># 0.1 deg. / frame</li>\n\t<li>#&nbsp; 50 frames / datasets</li>\n\t<li># 100 frames in each data file</li>\n\t<li>#####################################################</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000005.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000006.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000007.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000008.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000009.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000010.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000011.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000012.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000013.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000014.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000015.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000016.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000017.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000018.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000019.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000020.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000021.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000022.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000023.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000024.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000025.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000026.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000027.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000028.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000029.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000030.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000031.h5</li>\n\t<li>hito-CPS1991-05//data/CPS1991-05-multi_master.h5</li>\n</ul>\n\n<p>&nbsp;</p>\n\n<ul>\n\t<li>#####################################################</li>\n\t<li># &#39;cry-00-??_master.h5&#39; are for &#39;partial helical&#39; datasets</li>\n\t<li>#####################################################</li>\n\t<li># 40.0 deg. / datasets</li>\n\t<li>#&nbsp; 0.1 deg. / frame</li>\n\t<li>#&nbsp; 400 frames / datasets</li>\n\t<li>#&nbsp; 100 frames in each data file</li>\n\t<li>#####################################################</li>\n\t<li>hito-CPS1991-05//data/cry-00-00_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-00_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-00_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-00_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-00_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-01_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-01_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-01_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-01_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-01_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-02_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-02_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-02_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-02_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-02_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-03_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-03_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-03_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-03_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-03_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-04_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-04_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-04_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-04_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-04_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-05_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-05_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-05_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-05_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-05_master.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-06_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-06_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-06_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-06_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-00-06_master.h5</li>\n</ul>\n\n<p>&nbsp;</p>\n\n<ul>\n\t<li>#####################################################</li>\n\t<li># &#39;cry-01-??_master.h5&#39; are for &#39;full rotation helical&#39; datasets</li>\n\t<li>#####################################################</li>\n\t<li># 60.0 deg. / datasets</li>\n\t<li>#&nbsp; 0.1 deg. / frame</li>\n\t<li>#&nbsp; 600 frames / datasets</li>\n\t<li>#&nbsp; 100 frames in each data file</li>\n\t<li># ** The program could collect &#39;full rotation&#39; helical dataset</li>\n\t<li># but 60 deg. was set for this demonstration.</li>\n\t<li>#####################################################</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000001.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000002.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000003.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000004.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000005.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_data_000006.h5</li>\n\t<li>hito-CPS1991-05//data/cry-01-00_master.h5</li>\n</ul>", 
    "doi": "10.5281/zenodo.1208078", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "publication_date": "2018-12-18", 
    "related_identifiers": [
      {
        "identifier": "10.5281/zenodo.1208077", 
        "relation": "isVersionOf", 
        "scheme": "doi"
      }
    ], 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "1208078"
          }, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "1208077"
          }
        }
      ]
    }, 
    "resource_type": {
      "title": "Dataset", 
      "type": "dataset"
    }, 
    "title": "Br soaked lysozyme datasets collected with the mixed scheme implemented in HITO in the ZOO system"
  }, 
  "owners": [
    43754
  ], 
  "revision": 6, 
  "stats": {
    "downloads": 7.0, 
    "unique_downloads": 7.0, 
    "unique_views": 142.0, 
    "version_downloads": 7.0, 
    "version_unique_downloads": 7.0, 
    "version_unique_views": 142.0, 
    "version_views": 181.0, 
    "version_volume": 284580319352.0, 
    "views": 181.0, 
    "volume": 284580319352.0
  }, 
  "updated": "2019-01-07T13:32:35.687880+00:00"
}
181
7
views
downloads
All versions This version
Views 181181
Downloads 77
Data volume 284.6 GB284.6 GB
Unique views 142142
Unique downloads 77

Share

Cite as