lingpy/lingpy-v2.6.3.zip
lingpy-lingpy-20716bb
.gitignore
515 Bytes
.travis.yml
934 Bytes
CONTRIBUTING.md
3.2 kB
CONVENTIONS.md
6.0 kB
MANIFEST.in
1.2 kB
PAPERS.md
13.9 kB
README.md
3.1 kB
README.rst
3.3 kB
RELEASING.md
1.8 kB
distribute_setup.py
17.7 kB
gpl-3.0.txt
35.1 kB
lingpy
README.md
3.1 kB
__init__.py
2.0 kB
__main__.py
35 Bytes
_settings.py
386 Bytes
algorithm
__init__.py
866 Bytes
_tree.py
5.1 kB
cluster_util.py
4.6 kB
clustering.py
32.0 kB
cython
__init__.py
62 Bytes
_calign.py
89.9 kB
_cluster.py
19.6 kB
_malign.py
20.5 kB
_misc.py
3.4 kB
_talign.py
32.5 kB
calign.c
1.5 MB
calign.pyx
90.6 kB
cluster.c
649.4 kB
cluster.pyx
19.7 kB
compilePYX.py
2.2 kB
malign.c
421.5 kB
malign.pyx
20.6 kB
misc.c
222.1 kB
misc.pyx
3.3 kB
talign.c
681.4 kB
talign.pyx
32.7 kB
extra.py
6.7 kB
align
__init__.py
277 Bytes
_align
__init__.py
69 Bytes
confidence.py
11.0 kB
multiple.py
72.7 kB
pairwise.py
19.4 kB
sca.py
60.7 kB
basic
__init__.py
330 Bytes
ops.py
18.4 kB
parser.py
20.6 kB
tree.py
6.3 kB
wordlist.py
42.9 kB
cache.py
783 Bytes
cli.py
23.5 kB
compare
__init__.py
46 Bytes
_phylogeny
__init__.py
1 Byte
_settings.py
1.0 kB
convex_hull.py
3.2 kB
polygon.py
3.4 kB
utils.py
5.5 kB
lexstat.py
72.3 kB
partial.py
24.3 kB
phylogeny.py
154.9 kB
sanity.py
8.0 kB
strings.py
24.0 kB
util.py
118 Bytes
compat.py
307 Bytes
config.py
1.8 kB
convert
__init__.py
64 Bytes
cldf.py
3.8 kB
graph.py
11.2 kB
html.py
25.6 kB
plot.py
35.2 kB
strings.py
19.6 kB
tree.py
1.8 kB
data
__init__.py
1.7 kB
conf
dictionary.rc
230 Bytes
qlc.rc
0 Bytes
swadesh.rc
127 Bytes
wordlist.rc
1.9 kB
derive.py
18.7 kB
ipa
__init__.py
0 Bytes
sampa.csv
2.5 kB
sampa.py
1.1 kB
model.py
5.9 kB
models
art
INFO
207 Bytes
converter
2.0 kB
art_el
INFO
249 Bytes
converter
183 Bytes
asjp
INFO
240 Bytes
asjp.py
3.3 kB
asjp_score_dict.csv
4.4 kB
cons_score
1.8 kB
converter
2.0 kB
matrix
12.9 kB
score
1.7 kB
vows_score
134 Bytes
asjp_el
INFO
0 Bytes
converter
282 Bytes
matrix
12.9 kB
burmish
converter
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color
INFO
200 Bytes
converter
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color_el
INFO
200 Bytes
converter
249 Bytes
cv
INFO
207 Bytes
converter
1.9 kB
diss
INFO
0 Bytes
converter
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makediss.py
622 Bytes
scorer
234 Bytes
dolgo
INFO
192 Bytes
converter
1.9 kB
matrix
1.5 kB
scorer
118 Bytes
dolgo_el
INFO
230 Bytes
converter
177 Bytes
matrix
1.5 kB
scorer
118 Bytes
dvt
diacritics
2.2 kB
tones
253 Bytes
vowels
160 Bytes
dvt_el
diacritics
6 Bytes
tones
75 Bytes
vowels
14 Bytes
gamb_el
converter
250 Bytes
internal_asjp
INFO
0 Bytes
converter
270 Bytes
jaeger
INFO
246 Bytes
converter
1.8 kB
gapPenalties.txt
30 Bytes
logodds.csv
25.4 kB
matrix
14.4 kB
jaeger_el
INFO
44 Bytes
converter
270 Bytes
matrix
14.4 kB
sca
INFO
210 Bytes
converter
2.0 kB
matrix
6.8 kB
scorer
457 Bytes
sca_el
INFO
228 Bytes
converter
222 Bytes
matrix
6.8 kB
scorer
457 Bytes
templates
README.md
395 Bytes
alm.css
2.7 kB
alm.js
6.4 kB
alm2html.html
532 Bytes
alm2html.table.html
239 Bytes
alm2html.table.js.html
616 Bytes
beast.nex
209 Bytes
jcov.css
170.8 kB
jcov.dighl.js
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jcov.direct.html
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jcov.js
30.2 kB
jcov.remote.html
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jcov.vendor.js
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mrbayes.nex
179 Bytes
msa.css
1.4 kB
msa.js
1.1 kB
msa.tex
2.3 kB
msa2html.html
1.9 kB
msa2html.js.html
2.0 kB
psa.css
2.1 kB
psa.html
492 Bytes
splitstree.nex
142 Bytes
evaluate
__init__.py
222 Bytes
acd.py
19.0 kB
alr.py
3.9 kB
apa.py
21.1 kB
log.py
4.1 kB
meaning
__init__.py
0 Bytes
colexification.py
7.5 kB
read
__init__.py
15 Bytes
csv.py
7.6 kB
phylip.py
3.2 kB
qlc.py
13.8 kB
starling.py
3.4 kB
sequence
__init__.py
311 Bytes
generate.py
5.9 kB
profile.py
9.3 kB
sound_classes.py
47.5 kB
settings.py
7.2 kB
tests
__init__.py
0 Bytes
algorithm
__init__.py
2 Bytes
test__tree.py
758 Bytes
test_cluster_util.py
974 Bytes
test_clustering.py
4.1 kB
test_cython.py
13.5 kB
test_extra.py
2.8 kB
align
__init__.py
0 Bytes
test_align_confidence.py
0 Bytes
test_multiple.py
2.8 kB
test_pairwise.py
2.1 kB
test_sca.py
4.9 kB
basic
__init__.py
134 Bytes
test_ops.py
4.4 kB
test_parser.py
3.7 kB
test_tree.py
1.7 kB
test_wordlist.py
5.7 kB
compare
__init__.py
0 Bytes
test__phylogeny.py
3.3 kB
test_lexstat.py
8.3 kB
test_partial.py
3.0 kB
test_phylogeny.py
3.8 kB
test_sanity.py
1.1 kB
test_strings.py
4.2 kB
convert
__init__.py
0 Bytes
test_cldf.py
382 Bytes
test_graph.py
808 Bytes
test_html.py
1.2 kB
test_plot.py
2.8 kB
test_strings.py
11.8 kB
test_tree.py
554 Bytes
data
__init__.py
0 Bytes
test_derive.py
1.2 kB
test_sound_class_models.py
937 Bytes
evaluate
__init__.py
55 Bytes
test_acd.py
3.6 kB
test_alr.py
590 Bytes
test_apa.py
1.2 kB
meaning
__init__.py
0 Bytes
test_colexification.py
2.3 kB
output
README.md
52 Bytes
read
__init__.py
0 Bytes
test_csv.py
3.1 kB
test_phylip.py
2.9 kB
test_qlc.py
816 Bytes
test_starling.py
410 Bytes
sequence
__init__.py
0 Bytes
test_generate.py
830 Bytes
test_profile.py
808 Bytes
test_sound_classes.py
7.3 kB
test_cache.py
434 Bytes
test_cli.py
4.9 kB
test_config.py
1.0 kB
test_data
GER.tsv
397 Bytes
Haspelmath-2009-1460.tsv
232.4 kB
Jachontov-1991-100.tsv
1.4 kB
KSL.bscorer.json
196.0 kB
KSL.pairs.json
65.7 kB
KSL.qlc
65.7 kB
KSL.rscorer.json
6.8 kB
KSL2.qlc
85.7 kB
KSL3.qlc
585.6 kB
KSL4.qlc
956 Bytes
KSL5.qlc
668 Bytes
KSL6.qlc
677 Bytes
Ringe-2002-421.tsv
3.5 kB
aleman2000-9-69.csv
13.5 kB
alm.alm
148 Bytes
asjp_test_list.csv
135.8 kB
asjp_test_list.tsv
135.8 kB
bad_file.tsv
176 Bytes
bad_file2.tsv
210 Bytes
burtch1983-19-262.csv
62.0 kB
cldf
cognates.csv
524 Bytes
forms.csv
1.5 kB
languages.csv
1.0 kB
parameters.csv
54 Bytes
sources.bib
5.4 kB
test-metadata.json
10.2 kB
colexification.tsv
327 Bytes
concept_graph_wordlist_out.csv
23.6 kB
dolgo.matrix
1.5 kB
dolgo.scorer
1.5 kB
good_file.tsv
286 Bytes
harry.msa
178 Bytes
harry.msq
148 Bytes
harry_potter.psa
281 Bytes
harry_potter.psq
268 Bytes
harry_potter_bad.psa
257 Bytes
harry_potter_misaligned.psa
289 Bytes
harry_unnormal.msa
89 Bytes
harry_with_ids.msa
179 Bytes
harryp.msa
282 Bytes
leach1969-67-161.csv
337.0 kB
listA.tsv
232.4 kB
listB.tsv
1.4 kB
mycsvwordlist.csv
251 Bytes
mycsvwordlistwithoutids.csv
227 Bytes
partial_cognates-scored.tsv
153.5 kB
partial_cognates.tsv
1.4 kB
phybo-r-3
182 Bytes
phybo-r-3.gls
1.4 kB
phybo-t-3
163 Bytes
phybo-t-3.gls
1.8 kB
phybo-w-1-1
177 Bytes
phybo-w-1-1.gls
1.1 kB
phybo.qlc
32.1 kB
phybo.tre
388 Bytes
phybo2.qlc
24.5 kB
phylip_basic.dst
132 Bytes
phylip_tabstop.dst
98 Bytes
phylogeny.taxa
329 Bytes
phylogeny.tre
388 Bytes
read_qlc.qlc
26.8 kB
rom.starling.tsv
4.9 kB
target_list_ringe.tsv
2.2 kB
test_csv.csv
153 Bytes
test_reduce.msa
374 Bytes
test_tokenization.tsv
305.0 kB
test_tokenization_mv.tsv
3.5 kB
test_tokenization_nasals.tsv
95 Bytes
tokens.test
128.3 kB
tokentestjs
176.8 kB
tutorial.qlc
593 Bytes
test_log.py
2.3 kB
test_util.py
2.2 kB
thirdparty
__init__.py
0 Bytes
test_cogent.py
5.3 kB
test_linkcomm.py
978 Bytes
util.py
571 Bytes
util_testing.py
1.2 kB
thirdparty
__init__.py
22 Bytes
cogent
__init__.py
106 Bytes
newick.py
7.2 kB
tree.py
88.3 kB
linkcomm
__init__.py
347 Bytes
link_clustering.py
11.0 kB
util.py
6.1 kB
readthedocs.yml
50 Bytes
requirements.txt
59 Bytes
setup.cfg
202 Bytes
setup.py
5.4 kB
tox.ini
261 Bytes