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Processed read counts from macrophage RNA-seq and ATAC-seq experiments

Alasoo, Kaur; Gaffney, Daniel


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{
  "description": "<p><strong>RNA-seq files:</strong></p>\n\n<ol>\n\t<li>RNA_count_matrix.txt.gz - raw read counts</li>\n\t<li>RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>RNA_gene_metadata.txt.gz - information about the genes</li>\n\t<li>RNA_sample_metadata.txt.gz - information about the samples</li>\n</ol>\n\n<p><strong>ATAC-seq files:</strong></p>\n\n<ol>\n\t<li>ATAC_count_matrix.txt.gz - raw read counts</li>\n\t<li>ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>ATAC_peak_metadata.txt.gz - peak coordinates and other metadata</li>\n\t<li>ATAC_sample_metadata.txt.gz - sample metadata</li>\n\t<li>ATAC_consensus_peaks.gff3.gz - GFF3 file containing the GRCh38 coordinates of the peaks</li>\n</ol>", 
  "license": "http://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Wellcome Trust Sanger Institute", 
      "@id": "https://orcid.org/0000-0002-1761-8881", 
      "@type": "Person", 
      "name": "Alasoo, Kaur"
    }, 
    {
      "affiliation": "Wellcome Trust Sanger Institute", 
      "@type": "Person", 
      "name": "Gaffney, Daniel"
    }
  ], 
  "url": "https://zenodo.org/record/1188300", 
  "datePublished": "2017-01-25", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_consensus_peaks.gff3.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_count_matrix.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_cqn_matrix.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_metadata_columns.txt", 
      "@type": "DataDownload", 
      "fileFormat": "txt"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_peak_metadata.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_sample_metadata.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_count_matrix.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_cqn_matrix.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_gene_metadata.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_metadata_columns.txt", 
      "@type": "DataDownload", 
      "fileFormat": "txt"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_sample_metadata.txt.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.1188300", 
  "@id": "https://doi.org/10.5281/zenodo.1188300", 
  "@type": "Dataset", 
  "name": "Processed read counts from macrophage RNA-seq and ATAC-seq experiments"
}
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