Dataset Open Access
{ "files": [ { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_consensus_peaks.gff3.gz" }, "checksum": "md5:1931d916e4bc98dd0d0042fad4506cba", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_consensus_peaks.gff3.gz", "type": "gz", "size": 3449583 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_count_matrix.txt.gz" }, "checksum": "md5:1abd84d00542dd4f40f340e5499f4700", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_count_matrix.txt.gz", "type": "gz", "size": 45029754 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_cqn_matrix.txt.gz" }, "checksum": "md5:589f2ffc1a1586d70ab9522216f291c2", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_cqn_matrix.txt.gz", "type": "gz", "size": 114763266 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_metadata_columns.txt" }, "checksum": "md5:6f2d64677aeb125f314a86d8bc869d96", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_metadata_columns.txt", "type": "txt", "size": 2596 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_peak_metadata.txt.gz" }, "checksum": "md5:9183cf79f6ff266f901a3595a70432af", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_peak_metadata.txt.gz", "type": "gz", "size": 5864161 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/ATAC_sample_metadata.txt.gz" }, "checksum": "md5:a57a4ee6eb679452381e2dc9455e9062", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "ATAC_sample_metadata.txt.gz", "type": "gz", "size": 12002 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_count_matrix.txt.gz" }, "checksum": "md5:ea78bce7df317921aa3c24ae22d971b7", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "RNA_count_matrix.txt.gz", "type": "gz", "size": 10911973 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_cqn_matrix.txt.gz" }, "checksum": "md5:a302dd9912afeb4cf4fa69d5f990e8fd", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "RNA_cqn_matrix.txt.gz", "type": "gz", "size": 28376630 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_gene_metadata.txt.gz" }, "checksum": "md5:e625f24fcf331301385455f577a79c8e", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "RNA_gene_metadata.txt.gz", "type": "gz", "size": 2947865 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_metadata_columns.txt" }, "checksum": "md5:11592b909fdcdb764f624b5c740460d7", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "RNA_metadata_columns.txt", "type": "txt", "size": 2188 }, { "links": { "self": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd/RNA_sample_metadata.txt.gz" }, "checksum": "md5:e575d50dea2a261c6f274df725eed1b3", "bucket": "25d5c70c-7035-47b5-b9a8-3a18084bbebd", "key": "RNA_sample_metadata.txt.gz", "type": "gz", "size": 10423 } ], "owners": [ 11899 ], "doi": "10.5281/zenodo.1188300", "stats": { "version_unique_downloads": 61.0, "unique_views": 445.0, "views": 471.0, "downloads": 103.0, "unique_downloads": 40.0, "version_unique_views": 598.0, "volume": 1343499796.0, "version_downloads": 153.0, "version_views": 653.0, "version_volume": 2362000283.0 }, "links": { "doi": "https://doi.org/10.5281/zenodo.1188300", "conceptdoi": "https://doi.org/10.5281/zenodo.748695", "bucket": "https://zenodo.org/api/files/25d5c70c-7035-47b5-b9a8-3a18084bbebd", "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.748695.svg", "html": "https://zenodo.org/record/1188300", "latest_html": "https://zenodo.org/record/1188300", "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.1188300.svg", "latest": "https://zenodo.org/api/records/1188300" }, "conceptdoi": "10.5281/zenodo.748695", "created": "2018-03-03T22:16:39.743886+00:00", "updated": "2019-11-01T07:13:01.290640+00:00", "conceptrecid": "748695", "revision": 4, "id": 1188300, "metadata": { "access_right_category": "success", "doi": "10.5281/zenodo.1188300", "description": "<p><strong>RNA-seq files:</strong></p>\n\n<ol>\n\t<li>RNA_count_matrix.txt.gz - raw read counts</li>\n\t<li>RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>RNA_gene_metadata.txt.gz - information about the genes</li>\n\t<li>RNA_sample_metadata.txt.gz - information about the samples</li>\n</ol>\n\n<p><strong>ATAC-seq files:</strong></p>\n\n<ol>\n\t<li>ATAC_count_matrix.txt.gz - raw read counts</li>\n\t<li>ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>ATAC_peak_metadata.txt.gz - peak coordinates and other metadata</li>\n\t<li>ATAC_sample_metadata.txt.gz - sample metadata</li>\n\t<li>ATAC_consensus_peaks.gff3.gz - GFF3 file containing the GRCh38 coordinates of the peaks</li>\n</ol>", "license": { "id": "CC-BY-4.0" }, "title": "Processed read counts from macrophage RNA-seq and ATAC-seq experiments", "relations": { "version": [ { "count": 3, "index": 2, "parent": { "pid_type": "recid", "pid_value": "748695" }, "is_last": true, "last_child": { "pid_type": "recid", "pid_value": "1188300" } } ] }, "communities": [ { "id": "macrophage-gene-expression-genetics" } ], "publication_date": "2017-01-25", "creators": [ { "orcid": "0000-0002-1761-8881", "affiliation": "Wellcome Trust Sanger Institute", "name": "Alasoo, Kaur" }, { "affiliation": "Wellcome Trust Sanger Institute", "name": "Gaffney, Daniel" } ], "access_right": "open", "resource_type": { "type": "dataset", "title": "Dataset" }, "related_identifiers": [ { "scheme": "doi", "identifier": "10.5281/zenodo.748695", "relation": "isVersionOf" } ] } }
All versions | This version | |
---|---|---|
Views | 653 | 471 |
Downloads | 153 | 103 |
Data volume | 2.4 GB | 1.3 GB |
Unique views | 598 | 445 |
Unique downloads | 61 | 40 |