Dataset Open Access

Processed read counts from macrophage RNA-seq and ATAC-seq experiments

Alasoo, Kaur; Gaffney, Daniel


Citation Style Language JSON Export

{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.1188300", 
  "title": "Processed read counts from macrophage RNA-seq and ATAC-seq experiments", 
  "issued": {
    "date-parts": [
      [
        2017, 
        1, 
        25
      ]
    ]
  }, 
  "abstract": "<p><strong>RNA-seq files:</strong></p>\n\n<ol>\n\t<li>RNA_count_matrix.txt.gz - raw read counts</li>\n\t<li>RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>RNA_gene_metadata.txt.gz - information about the genes</li>\n\t<li>RNA_sample_metadata.txt.gz - information about the samples</li>\n</ol>\n\n<p><strong>ATAC-seq files:</strong></p>\n\n<ol>\n\t<li>ATAC_count_matrix.txt.gz - raw read counts</li>\n\t<li>ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package</li>\n\t<li>ATAC_peak_metadata.txt.gz - peak coordinates and other metadata</li>\n\t<li>ATAC_sample_metadata.txt.gz - sample metadata</li>\n\t<li>ATAC_consensus_peaks.gff3.gz - GFF3 file containing the GRCh38 coordinates of the peaks</li>\n</ol>", 
  "author": [
    {
      "family": "Alasoo, Kaur"
    }, 
    {
      "family": "Gaffney, Daniel"
    }
  ], 
  "type": "dataset", 
  "id": "1188300"
}
487
145
views
downloads
All versions This version
Views 487323
Downloads 14598
Data volume 2.3 GB1.3 GB
Unique views 439300
Unique downloads 5537

Share

Cite as