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Repository of "Instantiation of patient-specific logical models with multi-omics data allows clinical stratification of patients" paper

Béal, Jonas; Montagud, Arnau; Traynard, Pauline; Barillot, Emmanuel; Calzone, Laurence


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  <identifier identifierType="DOI">10.5281/zenodo.1186270</identifier>
  <creators>
    <creator>
      <creatorName>Béal, Jonas</creatorName>
      <givenName>Jonas</givenName>
      <familyName>Béal</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-1949-9801</nameIdentifier>
      <affiliation>Institut Curie</affiliation>
    </creator>
    <creator>
      <creatorName>Montagud, Arnau</creatorName>
      <givenName>Arnau</givenName>
      <familyName>Montagud</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7696-1241</nameIdentifier>
      <affiliation>Institut Curie</affiliation>
    </creator>
    <creator>
      <creatorName>Traynard, Pauline</creatorName>
      <givenName>Pauline</givenName>
      <familyName>Traynard</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-4835-9114</nameIdentifier>
      <affiliation>Institut Curie</affiliation>
    </creator>
    <creator>
      <creatorName>Barillot, Emmanuel</creatorName>
      <givenName>Emmanuel</givenName>
      <familyName>Barillot</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-2724-2002</nameIdentifier>
      <affiliation>Institut Curie</affiliation>
    </creator>
    <creator>
      <creatorName>Calzone, Laurence</creatorName>
      <givenName>Laurence</givenName>
      <familyName>Calzone</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7835-1148</nameIdentifier>
      <affiliation>Institut Curie</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Repository of "Instantiation of patient-specific logical models with multi-omics data allows clinical stratification of patients" paper</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <subjects>
    <subject>personalized medicine</subject>
    <subject>logical modelling</subject>
    <subject>patient-specific models</subject>
    <subject>data integration</subject>
    <subject>omics data</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2018-02-28</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1186270</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/sysbio-curie/Instantiation_logical_models/tree/v1.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementedBy">https://bitbucket.org/Arnau_Montagud/instantiation_logical_models_data</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1186269</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0</version>
  <rightsList>
    <rights rightsURI="http://www.opensource.org/licenses/BSD-3-Clause">BSD 3-Clause "New" or "Revised" License</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Instantiation of logical models status upon submission of paper in Frontiers in Physiology.&lt;/p&gt;

&lt;p&gt;Code, models and scripts needed to reproduce the tailoring of logical models to patient-specific omics data&lt;/p&gt;

&lt;p&gt;Additionaly, some files needed to be stored in the accompaning &lt;a href="https://bitbucket.org/Arnau_Montagud/instantiation_logical_models_data"&gt;Bitbucket repository&lt;/a&gt;. They need to be dowloaded from &lt;a href="https://bitbucket.org/Arnau_Montagud/instantiation_logical_models_data/downloads/"&gt;this link&lt;/a&gt; and unzipped in the corresponding folders.&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;div class="adsbox"&gt;&amp;nbsp;&lt;/div&gt;</description>
    <description descriptionType="Other">This work received funding from the European Union Horizon 2020 research and innovation program under grant agreement No 668858 (PrECISE project).</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/H2020/668858/">668858</awardNumber>
      <awardTitle>PERSONALIZED ENGINE FOR CANCER INTEGRATIVE STUDY AND EVALUATION</awardTitle>
    </fundingReference>
  </fundingReferences>
</resource>
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