EMDataBank 2015/2016 Map Challenge Archive Created December 21, 2017 by C. Lawson, Rutgers University Updated February 27, 2018 ================ [target]_benchmark.zip files: Archives of submitted reconstructions for each of the benchmark targets. emcd### identifies individual submissions. each submission has the following associated files: emcd###_[target]_filtered.mrc.gz : final filtered map emcd###_[target]_unfiltered.mrc.gz : raw unfiltered map emcd###_[target]_odd.mrc.gz and _even.mrc.gz : half-maps emcd###_[target]_mask.mrc.gz : masks used for analysis (optional) emcd###_[target]_params.emx or .tar : particle parameters used in the reconstruction [pdbid]_fit_emcd###_[target].pdb.gz : reference model coordinates rigid-body fitted to the final filtered map [target] list with EMPIAR entry/ies for associated raw image data (http://pdbe.org/empiar/) BetaGal : EMPIAR-10012 and EMPIAR-10013 BMV : EMPIAR-10010 and EMPIAR-10011 Ferritin : EMPIAR-10026 GroEL : EMPIAR-10029 Proteasome : EMPIAR-10025 Ribosome : EMPIAR-10028 TRPVI : EMPIAR-10005 ============== Images_for_all_benchmarks.zip : Snapshots for each of the submitted maps in orthogonal views, both with and without reference model superimposed, produced using UCSF Chimera. Map Challenge Web Contents Archive.pdf: Compilation of web-based content for the 2015/2016 map challenge including announcements, goals, benchmark target details, participation guide, with hyperlinks. ============== maps_revised2018.zip contains “final” revised maps for 11 map challenge entries, submitted in the period between mid-October 2017 and mid-January 2018. These 11 entries were updated by the original submission authors. emcd134_BetaGal emcd157_BetaGal emcd160_BetaGal emcd110_BMV emcd155_Ferritin emcd158_GroEL emcd103_Proteasome emcd130_Proteasome emcd111_Ribosome emcd146_TRPVI emcd163_TRPVI The zip file is divided up into target subdirectories; filenames are as indicated above with “revised_” appended.