Dataset Open Access

Silva taxonomic training data formatted for DADA2 (Silva version 132)

Callahan, Benjamin


MARC21 XML Export

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    <subfield code="a">&lt;p&gt;These DADA2-formatted training fasta files&amp;nbsp;were derived from the Silva Project&amp;#39;s version 132 release. They are available&amp;nbsp;under the Silva dual-licensing&amp;nbsp;model for academia and commercial users:&amp;nbsp;https://www.arb-silva.de/silva-license-information/&lt;/p&gt;

&lt;p&gt;These fastas were generated by the following commands (using the dada2 R package version 1.7.6):&lt;/p&gt;

&lt;blockquote&gt;
&lt;p&gt;path &amp;lt;- &amp;quot;~/Desktop/Silva/Silva.nr_v132&amp;quot;&lt;br&gt;
dada2:::makeTaxonomyFasta_Silva(file.path(path, &amp;quot;silva.nr_v132.align&amp;quot;),&amp;nbsp;file.path(path, &amp;quot;silva.nr_v132.tax&amp;quot;), &amp;quot;~/tax/silva_nr_v132_train_set.fa.gz&amp;quot;)&lt;/p&gt;

&lt;p&gt;dada2:::makeSpeciesFasta_Silva(&amp;quot;~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz&amp;quot;, &amp;quot;~/tax/silva_species_assignment_v132.fa.gz&amp;quot;)&lt;/p&gt;
&lt;/blockquote&gt;</subfield>
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