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Silva taxonomic training data formatted for DADA2 (Silva version 132)

Callahan, Benjamin


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Callahan, Benjamin</dc:creator>
  <dc:date>2018-02-13</dc:date>
  <dc:description>These DADA2-formatted training fasta files were derived from the Silva Project's version 132 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/

These fastas were generated by the following commands (using the dada2 R package version 1.7.6):


path &lt;- "~/Desktop/Silva/Silva.nr_v132"
dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz")

dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")
</dc:description>
  <dc:identifier>https://zenodo.org/record/1172783</dc:identifier>
  <dc:identifier>10.5281/zenodo.1172783</dc:identifier>
  <dc:identifier>oai:zenodo.org:1172783</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.1172782</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:subject>Silva</dc:subject>
  <dc:subject>DADA2</dc:subject>
  <dc:subject>taxonomy</dc:subject>
  <dc:title>Silva taxonomic training data formatted for DADA2 (Silva version 132)</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
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