February 13, 2018 Dataset Open Access

Callahan, Benjamin

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{
  "description": "<p>These DADA2-formatted training fasta files&nbsp;were derived from the Silva Project&#39;s version 132 release. They are available&nbsp;under the Silva dual-licensing&nbsp;model for academia and commercial users:&nbsp;https://www.arb-silva.de/silva-license-information/</p>\n\n<p>These fastas were generated by the following commands (using the dada2 R package version 1.7.6):</p>\n\n<blockquote>\n<p>path &lt;- &quot;~/Desktop/Silva/Silva.nr_v132&quot;<br>\ndada2:::makeTaxonomyFasta_Silva(file.path(path, &quot;silva.nr_v132.align&quot;),&nbsp;file.path(path, &quot;silva.nr_v132.tax&quot;), &quot;~/tax/silva_nr_v132_train_set.fa.gz&quot;)</p>\n\n<p>dada2:::makeSpeciesFasta_Silva(&quot;~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz&quot;, &quot;~/tax/silva_species_assignment_v132.fa.gz&quot;)</p>\n</blockquote>", 
  "license": "", 
  "creator": [
    {
      "affiliation": "NC State University", 
      "@id": "https://orcid.org/0000-0002-8752-117X", 
      "@type": "Person", 
      "name": "Callahan, Benjamin"
    }
  ], 
  "url": "https://zenodo.org/record/1172783", 
  "datePublished": "2018-02-13", 
  "keywords": [
    "Silva", 
    "DADA2", 
    "taxonomy"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/334f242a-a685-4bbc-bbf4-a0b87044bee2/SILVA_LICENSE", 
      "encodingFormat": "", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/334f242a-a685-4bbc-bbf4-a0b87044bee2/silva_nr_v132_train_set.fa.gz", 
      "encodingFormat": "gz", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/334f242a-a685-4bbc-bbf4-a0b87044bee2/silva_species_assignment_v132.fa.gz", 
      "encodingFormat": "gz", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.1172783", 
  "@id": "https://doi.org/10.5281/zenodo.1172783", 
  "@type": "Dataset", 
  "name": "Silva taxonomic training data formatted for DADA2 (Silva version 132)"
}