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Silva taxonomic training data formatted for DADA2 (Silva version 132)

Callahan, Benjamin


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  <identifier identifierType="DOI">10.5281/zenodo.1172783</identifier>
  <creators>
    <creator>
      <creatorName>Callahan, Benjamin</creatorName>
      <givenName>Benjamin</givenName>
      <familyName>Callahan</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8752-117X</nameIdentifier>
      <affiliation>NC State University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Silva taxonomic training data formatted for DADA2 (Silva version 132)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <subjects>
    <subject>Silva</subject>
    <subject>DADA2</subject>
    <subject>taxonomy</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2018-02-13</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1172783</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1172782</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;These DADA2-formatted training fasta files&amp;nbsp;were derived from the Silva Project&amp;#39;s version 132 release. They are available&amp;nbsp;under the Silva dual-licensing&amp;nbsp;model for academia and commercial users:&amp;nbsp;https://www.arb-silva.de/silva-license-information/&lt;/p&gt;

&lt;p&gt;These fastas were generated by the following commands (using the dada2 R package version 1.7.6):&lt;/p&gt;

&lt;blockquote&gt;
&lt;p&gt;path &amp;lt;- &amp;quot;~/Desktop/Silva/Silva.nr_v132&amp;quot;&lt;br&gt;
dada2:::makeTaxonomyFasta_Silva(file.path(path, &amp;quot;silva.nr_v132.align&amp;quot;),&amp;nbsp;file.path(path, &amp;quot;silva.nr_v132.tax&amp;quot;), &amp;quot;~/tax/silva_nr_v132_train_set.fa.gz&amp;quot;)&lt;/p&gt;

&lt;p&gt;dada2:::makeSpeciesFasta_Silva(&amp;quot;~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz&amp;quot;, &amp;quot;~/tax/silva_species_assignment_v132.fa.gz&amp;quot;)&lt;/p&gt;
&lt;/blockquote&gt;</description>
  </descriptions>
</resource>
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