Dataset Open Access
<?xml version='1.0' encoding='utf-8'?> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#"> <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.1172783"> <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/> <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.1172783</dct:identifier> <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.1172783"/> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0002-8752-117X"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-8752-117X</dct:identifier> <foaf:name>Callahan, Benjamin</foaf:name> <foaf:givenName>Benjamin</foaf:givenName> <foaf:familyName>Callahan</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>NC State University</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:title>Silva taxonomic training data formatted for DADA2 (Silva version 132)</dct:title> <dct:publisher> <foaf:Agent> <foaf:name>Zenodo</foaf:name> </foaf:Agent> </dct:publisher> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2018</dct:issued> <dcat:keyword>Silva</dcat:keyword> <dcat:keyword>DADA2</dcat:keyword> <dcat:keyword>taxonomy</dcat:keyword> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2018-02-13</dct:issued> <owl:sameAs rdf:resource="https://zenodo.org/record/1172783"/> <adms:identifier> <adms:Identifier> <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/1172783</skos:notation> <adms:schemeAgency>url</adms:schemeAgency> </adms:Identifier> </adms:identifier> <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.1172782"/> <dct:description><p>These DADA2-formatted training fasta files&nbsp;were derived from the Silva Project&#39;s version 132 release. They are available&nbsp;under the Silva dual-licensing&nbsp;model for academia and commercial users:&nbsp;https://www.arb-silva.de/silva-license-information/</p> <p>These fastas were generated by the following commands (using the dada2 R package version 1.7.6):</p> <blockquote> <p>path &lt;- &quot;~/Desktop/Silva/Silva.nr_v132&quot;<br> dada2:::makeTaxonomyFasta_Silva(file.path(path, &quot;silva.nr_v132.align&quot;),&nbsp;file.path(path, &quot;silva.nr_v132.tax&quot;), &quot;~/tax/silva_nr_v132_train_set.fa.gz&quot;)</p> <p>dada2:::makeSpeciesFasta_Silva(&quot;~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz&quot;, &quot;~/tax/silva_species_assignment_v132.fa.gz&quot;)</p> </blockquote></dct:description> <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/> <dct:accessRights> <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess"> <rdfs:label>Open Access</rdfs:label> </dct:RightsStatement> </dct:accessRights> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.1172783"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.1172783"/> <dcat:byteSize>1734</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/1172783/files/SILVA_LICENSE"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.1172783"/> <dcat:byteSize>60083420</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/1172783/files/silva_nr_v132_train_set.fa.gz"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.1172783"/> <dcat:byteSize>61339953</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/1172783/files/silva_species_assignment_v132.fa.gz"/> </dcat:Distribution> </dcat:distribution> </rdf:Description> </rdf:RDF>
All versions | This version | |
---|---|---|
Views | 24,074 | 24,099 |
Downloads | 41,463 | 41,426 |
Data volume | 2.4 TB | 2.4 TB |
Unique views | 20,957 | 20,977 |
Unique downloads | 21,574 | 21,554 |