Dataset Open Access

Silva taxonomic training data formatted for DADA2 (Silva version 132)

Callahan, Benjamin


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.1172783", 
  "author": [
    {
      "family": "Callahan, Benjamin"
    }
  ], 
  "issued": {
    "date-parts": [
      [
        2018, 
        2, 
        13
      ]
    ]
  }, 
  "abstract": "<p>These DADA2-formatted training fasta files&nbsp;were derived from the Silva Project&#39;s version 132 release. They are available&nbsp;under the Silva dual-licensing&nbsp;model for academia and commercial users:&nbsp;https://www.arb-silva.de/silva-license-information/</p>\n\n<p>These fastas were generated by the following commands (using the dada2 R package version 1.7.6):</p>\n\n<blockquote>\n<p>path &lt;- &quot;~/Desktop/Silva/Silva.nr_v132&quot;<br>\ndada2:::makeTaxonomyFasta_Silva(file.path(path, &quot;silva.nr_v132.align&quot;),&nbsp;file.path(path, &quot;silva.nr_v132.tax&quot;), &quot;~/tax/silva_nr_v132_train_set.fa.gz&quot;)</p>\n\n<p>dada2:::makeSpeciesFasta_Silva(&quot;~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz&quot;, &quot;~/tax/silva_species_assignment_v132.fa.gz&quot;)</p>\n</blockquote>", 
  "title": "Silva taxonomic training data formatted for DADA2 (Silva version 132)", 
  "type": "dataset", 
  "id": "1172783"
}
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