Preview

tRophicPosition-v0.7.5.zip

clquezada-tRophicPosition-d67c272
- .Rbuildignore 206 Bytes
- .gitignore 81 Bytes
- .travis.yml 428 Bytes
- DESCRIPTION 1.0 kB
- NAMESPACE 732 Bytes
- NEWS.md 688 Bytes
- R
  - Bilagay.R 957 Bytes
  - Finnish_Lakes.R 703 Bytes
  - Orestias.R 1.1 kB
  - Roach.R 1.2 kB
  - TDF.R 10.0 kB
  - TEF.R 8.8 kB
  - TPmodel.R 2.2 kB
  - Trout.R 1.0 kB
  - biPlot.R 4.2 kB
  - checkNames.R 1.5 kB
  - compareTwoDistributions.R 6.5 kB
  - credibilityIntervals.R 11.8 kB
  - extractIsotopeData.R 6.4 kB
  - extractPredictiveData.R 3.1 kB
  - fromParallelTP.R 2.5 kB
  - generataTPData.R 7.0 kB
  - getPosteriorMode.R 1.3 kB
  - jagsBayesianModel.R 2.5 kB
  - jagsOneBaseline.R 8.7 kB
  - jagsTwoBaselines.R 13.8 kB
  - jagsTwoBaselinesFull.R 15.3 kB
  - jagsTwoBaselinesFullc.R 11.3 kB
  - jagsTwoBaselinesPost.R 11.3 kB
  - loadIsotopeData.R 5.5 kB
  - multiModelTP.R 8.0 kB
  - multiSpeciesTP.R 5.6 kB
  - pairwiseComparisons.R 1.7 kB
  - parametricTP.R 5.4 kB
  - plot.isotopeData.R 2.2 kB
  - plotMCMC.R 4.3 kB
  - plotTP.R 3.8 kB
  - posteriorTP.R 2.9 kB
  - reOrder.R 897 Bytes
  - screenFoodWeb.R 2.8 kB
  - screenIsotopeData.R 3.7 kB
  - screenIsotopeData1source.R 2.6 kB
  - screenIsotopeData3sources.R 3.8 kB
  - screenIsotopeDataMoreSources.R 7.8 kB
  - simulateTDF.R 1.8 kB
  - simulateTEF.R 1.9 kB
  - summariseIsotopeData.R 2.1 kB
  - summary.isotopeData.R 1.9 kB
  - sysdata.rda 2.4 MB
  - theme0.R 854 Bytes
  - toStacked.R 3.6 kB
  - trophicDensityPlot.R 4.1 kB
  - zzz.R 268 Bytes
- README.md 6.4 kB
- codecov.yml 15 Bytes
- cran-comments.md 484 Bytes
- data
  - Bilagay.rda 3.3 kB
  - Finnish_Lakes.rda 41.8 kB
  - Orestias.rda 741 Bytes
  - Roach.rda 1.5 kB
  - Trout.rda 1.0 kB
- inst
  - extdata
    - Altiplano.txt 2.9 kB
    - Bilagay-MEC.csv 2.9 kB
    - Bilagay_for_tRophicPosition.csv 39.0 kB
    - Bilagay_for_tRophicPosition.xlsx 48.5 kB
    - YourOwnDataSet 570 Bytes
    - flowchart1.png 47.4 kB
    - flowchart2.png 33.0 kB
    - flowchart3.png 38.2 kB
- man
  - Bilagay.Rd 1.0 kB
  - Finnish_Lakes.Rd 835 Bytes
  - Orestias.Rd 1.2 kB
  - Roach.Rd 1.3 kB
  - TDF.Rd 1.2 kB
  - TEF.Rd 1.3 kB
  - TPmodel.Rd 1.5 kB
  - Trout.Rd 1.1 kB
  - compareTwoDistributions.Rd 1.2 kB
  - credibilityIntervals.Rd 3.2 kB
  - extractIsotopeData.Rd 2.0 kB
  - extractPredictiveData.Rd 2.9 kB
  - fromParallelTP.Rd 1.7 kB
  - generateTPData.Rd 2.9 kB
  - getPosteriorMode.Rd 922 Bytes
  - jagsBayesianModel.Rd 1.2 kB
  - jagsOneBaseline.Rd 3.3 kB
  - jagsTwoBaselines.Rd 5.0 kB
  - jagsTwoBaselinesFull.Rd 5.4 kB
  - loadIsotopeData.Rd 2.7 kB
  - multiModelTP.Rd 2.2 kB
  - multiSpeciesTP.Rd 2.5 kB
  - pairwiseComparisons.Rd 972 Bytes
  - parametricTP.Rd 2.3 kB
  - plot.isotopeData.Rd 1.1 kB
  - plotMCMC.Rd 530 Bytes
  - plotTP.Rd 718 Bytes
  - posteriorTP.Rd 1.6 kB
  - screenFoodWeb.Rd 1.3 kB
  - screenIsotopeData.Rd 1.3 kB
  - simulateTDF.Rd 1.0 kB
  - simulateTEF.Rd 1.2 kB
  - summariseIsotopeData.Rd 1.4 kB
  - summary.isotopeData.Rd 773 Bytes
  - trophicDensityPlot.Rd 1.4 kB
- tRophicPosition.Rproj 433 Bytes
- tests
  - testthat
    - test.TDF.R 303 Bytes
    - test.extractIsotopeData.R 1.4 kB
    - test.getPosteriorMode.R 277 Bytes
    - test.jagsBayesianModel.R 4.1 kB
    - test.jagsOneBaseline.R 931 Bytes
    - test.jagsTwoBaselines.R 1.1 kB
    - test.jagsTwoBaselinesFull.R 1.2 kB
    - test.loadIsotopeData.R 860 Bytes
    - test.parametricTP.R 167 Bytes
    - test.simulateTDF.R 510 Bytes
  - testthat.R 78 Bytes
- vignettes
  - Multiple_model_calculation_of_trophic_position_in_R.Rmd 20.5 kB
  - Multiple_species_calculation_of_trophic_position_in_R.Rmd 19.9 kB
  - Short_guide_to_tRophicPosition.Rmd 16.3 kB