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Benchmarking optimization methods for parameter estimation in large kinetic models

Villaverde, Alejandro F; Fröhlich, Fabian; Weindl, Daniel; Hasenauer, Jan; Banga, Julio R.

Software to reproduce the results presented in the paper "Benchmarking optimization methods for parameter estimation in large kinetic models". It includes two MATLAB toolboxes: AMICI and MEIGO, as well as MATLAB code to define the optimizations and to report the results as figures, tables, and summary files.

Files (760.7 MB)
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Documentation_supplement.pdf
md5:d10f4ec6fe9558fe169085c18dbfd3cb
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Results_supplement.pdf
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17.9 MB Download
SOFTWARE_SUPPLEMENT.zip
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742.8 MB Download
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