Dataset Open Access
N Pierre Charrier;
Marjorie Couton;
Maarten J Voordouw;
Olivier Rais;
Axelle Durand-Hermouet;
Caroline Hervet;
Olivier Plantard;
Claude Rispe
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Contig_name: name of the contig (Trinity assembly)</p>\n\n<p>2. sprot_Top_BLASTX_hit: first hit of the blastx search against SwissProt (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/)</p>\n\n<p>3. TrEMBL_Top_BLASTX_hit: first hit of the blastx search against Uniref90 (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/)</p>\n\n<p>4. RNAMMER: identification of non-coding RNAs</p>\n\n<p>5. prot_id: identifier of the predicted protein (TransDecoder)</p>\n\n<p>6. prot_coords: coordinates (start, end and strand) of the predicted protein on the contig</p>\n\n<p>7. sprot_Top_BLASTP_hit: first hit of the blastp search between the predicted protein and SwissProt (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/)</p>\n\n<p>8. TrEMBL_Top_BLASTP_hit: first hit of the blastp search between the predicted protein and Uniref90 (https://data.broadinstitute.org/Trinity/Trinotate v2.0 RESOURCES/)</p>\n\n<p>9. Pfam: result of the search against PfamA database</p>\n\n<p>10. SignalP: prediction of a signal peptide with SignalP</p>\n\n<p>11. TmHMM: prediction of a transmembrane domain with THMM</p>\n\n<p>12. eggnog: eggNOG database of orthologous genes (v3.0) assignation</p>\n\n<p>13. gene_ontology_blast: GO assignation based on blast results</p>\n\n<p>14. gene_ontology_pfam: GO assignation based on pfam results</p>\n\n<p>15. Contig_length: length of the contig in bp</p>\n\n<p>16. Busco_Id: name of the BUSCO (v1)</p>\n\n<p>17. Busco_status: status of the BUSCO (complete/fragmented/duplicated)</p>\n\n<p>18-32: Kallisto read counts for the 15 libraries</p>\n\n<p>A, B, C: unfed nymphs (replicates 1, 2, 3)</p>\n\n<p>D, E, F: partially fed nymphs (replicates 1, 2, 3)</p>\n\n<p>G, H, I: males (unfed) (replicates 1, 2, 3)</p>\n\n<p>J, K, L: unfed adult females (replicates 1, 2, 3)</p>\n\n<p>M, N, O: partially fed adult females (replicates 1, 2, 3)</p>\n\n<p>33. log2FoldChange_UnfedVsPartiallyFed: log fold change in base 2 of expression (comparison between "unfed" -including males- and "fed" ticks)</p>\n\n<p>34. pvalue_UnfedVsPartiallyFed: p-value of the comparison between "unfed" -including males- and "fed" ticks</p>\n\n<p>35. log2FoldChange_MaleVsFemale: log fold change in base 2 of expression (comparison between "males" and "females")</p>\n\n<p>36. pvalue_MaleVsFemale: p-value of the comparison between "males" and "females"</p>\n\n<p>37. log2FoldChange_NymphsVsAdults: log fold change in base 2 of expression (comparison between "nymphs" and "adults" -males and females-)</p>\n\n<p>38. pvalue_NymphsVsAdults: p-value of the comparison between "nymphs" and "adults" -males and females-)</p>\n\n<p> </p>\n\n<p> </p>", "license": { "id": "CC-BY-4.0" }, "title": "Annotation table - Whole body transcriptomes of the tick Ixodes ricinus at different stage and feeding conditions", "notes": "Fixed column 8 (blastp result on TrEMBL)", "relations": { "version": [ { "count": 2, "index": 1, "parent": { "pid_type": "recid", "pid_value": "832278" }, "is_last": true, "last_child": { "pid_type": "recid", "pid_value": "1137702" } } ] }, "keywords": [ "Ixodes ricinus, RNA-Seq, De novo assembly, Expression profiling, Polymorphism" ], "publication_date": "2017-08-01", "creators": [ { "orcid": "0000-0002-5681-0091", "affiliation": "INRA", "name": "N Pierre Charrier" }, { "affiliation": "INRA", "name": "Marjorie Couton" }, { "affiliation": "Universit\u00e9 de Neuch\u00e2tel", "name": "Maarten J Voordouw" }, { "affiliation": "Universit\u00e9 de Neuch\u00e2tel", "name": "Olivier Rais" }, { "affiliation": "INRA", "name": "Axelle Durand-Hermouet" }, { "affiliation": "INRA", "name": "Caroline Hervet" }, { "affiliation": "INRA", "name": "Olivier Plantard" }, { "affiliation": "INRA", "name": "Claude Rispe" } ], "access_right": "open", "resource_type": { "type": "dataset", "title": "Dataset" }, "related_identifiers": [ { "scheme": "doi", "identifier": "10.5281/zenodo.832278", "relation": "isVersionOf" } ] } }
All versions | This version | |
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Views | 129 | 107 |
Downloads | 30 | 28 |
Data volume | 2.8 GB | 2.6 GB |
Unique views | 121 | 102 |
Unique downloads | 26 | 24 |