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Dataset Open Access

CryoEM Maps and Associated Data Submitted to the 2015/2016 EMDataBank Map Challenge

Lawson, Catherine; Chiu, Wah; Carragher, Bridget; Carazo, Jose-Maria; Jiang, Wen; Patwardhan, Ardan; Rubinstein, John; Rosenthal, Peter; Sun, Fei; Vonck, Janet; Bai, Xiaochen; Bell, James; Caputo, Nick; Chakraborty, Arka; Chen, Dong-Hua; Chen, James; Diaz-Avalos, Ruben; Donati, Laurene; Estrozi, Leandro; Galaz Montoya, Jesus; Gati, Cornelius; Gomez-Blanco, Josue; Grigorieff, Nikolaus; Gros, Piet; Heymann, Bernard; Leith, ArDean; Li, Fei; Ludtke, Steven; Nans, Andrea; Nilchian, Masih; Punjabi, Ali; Sixma, Titia; Tegunov, Dimitry; Yang, Kailu; Yu, Guimei; Zhang, Junjie; Sala, Raul

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    <subfield code="a">&lt;p&gt;Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Map Challenge hosted at challenges.emdatabank.org are deposited.&lt;/p&gt;

&lt;p&gt;All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors.&lt;/p&gt;

&lt;p&gt;Seven benchmark raw image datasets were selected for the challenge. Six are selected from recently described single particle structure determinations with image data collected as multi-frame movies; one is based on simulated (in silico) images. All of the raw image datasets are archived at pdbe.org/empiar.&lt;/p&gt;

&lt;p&gt;27 Challengers created 66 single particle reconstructions from the targets, and then uploaded their results with associated details.&amp;nbsp; 15 of the reconstructions were calculated using the SDSC Gordon supercomputer.&lt;/p&gt;

&lt;p&gt;This map challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.&lt;/p&gt;

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Publication date:
December 21, 2017
DOI:
10.5281/zenodo.1120379

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Keyword(s):
cryo electron microscopy cryoEM validation challenge benchmark
Subject(s):
Benchmarking
Databases, Protein
Cryoelectron Microscopy
Imaging, Three Dimensional
Microscopy, Electron
Related identifiers:
Cites:
10.1093/nar/gkv1126, 10.1016/j.str.2011.12.014, 10.1016/j.jsb.2016.02.008
Documents:
http://challenges.emdatabank.org
References:
10.6019/EMPIAR-10010, 10.6019/EMPIAR-10012, 10.6019/EMPIAR-10013, 10.6019/EMPIAR-10026, 10.6019/EMPIAR-10029, 10.6019/EMPIAR-10025, 10.6019/EMPIAR-10028, 10.6019/EMPIAR-10005, 10.6019/EMPIAR-10011
Communities:
License (for files):
Creative Commons Attribution 4.0

Versions

Version 1.1 10.5281/zenodo.1185426 Dec 21, 2017
Version 1 10.5281/zenodo.1120379 Dec 21, 2017
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