Dataset Open Access
CryoEM Maps and Associated Data Submitted to the 2015/2016 EMDataBank Map Challenge
Lawson, Catherine;
Chiu, Wah;
Carragher, Bridget;
Carazo, Jose-Maria;
Jiang, Wen;
Patwardhan, Ardan;
Rubinstein, John;
Rosenthal, Peter;
Sun, Fei;
Vonck, Janet;
Bai, Xiaochen;
Bell, James;
Caputo, Nick;
Chakraborty, Arka;
Chen, Dong-Hua;
Chen, James;
Diaz-Avalos, Ruben;
Donati, Laurene;
Estrozi, Leandro;
Galaz Montoya, Jesus;
Gati, Cornelius;
Gomez-Blanco, Josue;
Grigorieff, Nikolaus;
Gros, Piet;
Heymann, Bernard;
Leith, ArDean;
Li, Fei;
Ludtke, Steven;
Nans, Andrea;
Nilchian, Masih;
Punjabi, Ali;
Sixma, Titia;
Tegunov, Dimitry;
Yang, Kailu;
Yu, Guimei;
Zhang, Junjie;
Sala, Raul
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<subfield code="a"><p>Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Map Challenge hosted at challenges.emdatabank.org are deposited.</p>
<p>All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors.</p>
<p>Seven benchmark raw image datasets were selected for the challenge. Six are selected from recently described single particle structure determinations with image data collected as multi-frame movies; one is based on simulated (in silico) images. All of the raw image datasets are archived at pdbe.org/empiar.</p>
<p>27 Challengers created 66 single particle reconstructions from the targets, and then uploaded their results with associated details.&nbsp; 15 of the reconstructions were calculated using the SDSC Gordon supercomputer.</p>
<p>This map challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.</p>
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| Views | 200 | 88 |
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| Data volume | 248.5 GB | 92.8 GB |
| Unique views | 180 | 85 |
| Unique downloads | 36 | 14 |
Indexed in
- Publication date:
- December 21, 2017
- DOI:
-
- Keyword(s):
- cryo electron microscopy cryoEM validation challenge benchmark
- Subject(s):
- Related identifiers:
- Cites:
10.1093/nar/gkv1126, 10.1016/j.str.2011.12.014, 10.1016/j.jsb.2016.02.008 - Documents:
http://challenges.emdatabank.org - References:
10.6019/EMPIAR-10010, 10.6019/EMPIAR-10012, 10.6019/EMPIAR-10013, 10.6019/EMPIAR-10026, 10.6019/EMPIAR-10029, 10.6019/EMPIAR-10025, 10.6019/EMPIAR-10028, 10.6019/EMPIAR-10005, 10.6019/EMPIAR-10011 - Communities:
- License (for files):
- Creative Commons Attribution 4.0 International