Dataset Open Access
Lawson, Catherine;
Chiu, Wah;
Carragher, Bridget;
Carazo, Jose-Maria;
Jiang, Wen;
Patwardhan, Ardan;
Rubinstein, John;
Rosenthal, Peter;
Sun, Fei;
Vonck, Janet;
Bai, Xiaochen;
Bell, James;
Caputo, Nick;
Chakraborty, Arka;
Chen, Dong-Hua;
Chen, James;
Diaz-Avalos, Ruben;
Donati, Laurene;
Estrozi, Leandro;
Galaz Montoya, Jesus;
Gati, Cornelius;
Gomez-Blanco, Josue;
Grigorieff, Nikolaus;
Gros, Piet;
Heymann, Bernard;
Leith, ArDean;
Li, Fei;
Ludtke, Steven;
Nans, Andrea;
Nilchian, Masih;
Punjabi, Ali;
Sixma, Titia;
Tegunov, Dimitry;
Yang, Kailu;
Yu, Guimei;
Zhang, Junjie;
Sala, Raul
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A Directors Award from the UCSD Supercomputer Center provided supercomputer access that was used in 15 of the 66 submitted entries.</subfield> </datafield> <controlfield tag="001">1120379</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">Stanford University, USA</subfield> <subfield code="0">(orcid)0000-0002-8910-3078</subfield> <subfield code="a">Chiu, Wah</subfield> </datafield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">New York Structural Biology Center, USA</subfield> <subfield code="0">(orcid)0000-0002-0624-5020</subfield> <subfield code="a">Carragher, Bridget</subfield> </datafield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">Centro Nacional de Biotecnología, Madrid, ES</subfield> <subfield code="0">(orcid)0000-0003-0788-8447</subfield> <subfield code="a">Carazo, Jose-Maria</subfield> </datafield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="u">Purdue University, USA</subfield> <subfield code="a">Jiang, 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"> <subfield code="a"><p>Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Map Challenge hosted at challenges.emdatabank.org are deposited.</p> <p>All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors.</p> <p>Seven benchmark raw image datasets were selected for the challenge. Six are selected from recently described single particle structure determinations with image data collected as multi-frame movies; one is based on simulated (in silico) images. All of the raw image datasets are archived at pdbe.org/empiar.</p> <p>27 Challengers created 66 single particle reconstructions from the targets, and then uploaded their results with associated details.&nbsp; 15 of the reconstructions were calculated using the SDSC Gordon supercomputer.</p> <p>This map challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.</p> <p>&nbsp;</p></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">cites</subfield> <subfield code="a">10.1093/nar/gkv1126</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">cites</subfield> <subfield code="a">10.1016/j.str.2011.12.014</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10010</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10012</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10013</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10026</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10029</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10025</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10028</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10005</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">references</subfield> <subfield code="a">10.6019/EMPIAR-10011</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">url</subfield> <subfield code="i">documents</subfield> <subfield code="a">http://challenges.emdatabank.org</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">cites</subfield> <subfield code="a">10.1016/j.jsb.2016.02.008</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.1120378</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.1120379</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">dataset</subfield> </datafield> </record>
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