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CryoEM Maps and Associated Data Submitted to the 2015/2016 EMDataBank Map Challenge

Lawson, Catherine; Chiu, Wah; Carragher, Bridget; Carazo, Jose-Maria; Jiang, Wen; Patwardhan, Ardan; Rubinstein, John; Rosenthal, Peter; Sun, Fei; Vonck, Janet; Bai, Xiaochen; Bell, James; Caputo, Nick; Chakraborty, Arka; Chen, Dong-Hua; Chen, James; Diaz-Avalos, Ruben; Donati, Laurene; Estrozi, Leandro; Galaz Montoya, Jesus; Gati, Cornelius; Gomez-Blanco, Josue; Grigorieff, Nikolaus; Gros, Piet; Heymann, Bernard; Leith, ArDean; Li, Fei; Ludtke, Steven; Nans, Andrea; Nilchian, Masih; Punjabi, Ali; Sixma, Titia; Tegunov, Dimitry; Yang, Kailu; Yu, Guimei; Zhang, Junjie; Sala, Raul


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      {
        "affiliation": "Rutgers University, USA", 
        "name": "Lawson, Catherine", 
        "orcid": "0000-0002-3261-7035"
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      {
        "affiliation": "Stanford University, USA", 
        "name": "Chiu, Wah", 
        "orcid": "0000-0002-8910-3078"
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        "affiliation": "New York Structural Biology Center, USA", 
        "name": "Carragher, Bridget", 
        "orcid": "0000-0002-0624-5020"
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        "affiliation": "Centro Nacional de Biotecnolog\u00eda, Madrid, ES", 
        "name": "Carazo, Jose-Maria", 
        "orcid": "0000-0003-0788-8447"
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      {
        "affiliation": "Purdue University, USA", 
        "name": "Jiang, Wen"
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      {
        "affiliation": "EMBL European Bioinformatics Institute, UK", 
        "name": "Patwardhan, Ardan", 
        "orcid": "0000-0001-7663-9028"
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      {
        "affiliation": "University of Toronto, CA", 
        "name": "Rubinstein, John", 
        "orcid": "0000-0003-0566-2209"
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      {
        "affiliation": "Francis Crick Institute, UK", 
        "name": "Rosenthal, Peter"
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      {
        "affiliation": "Chinese Academy of Sciences, CN", 
        "name": "Sun, Fei"
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        "affiliation": "Max Planck Institute for Biophysics, DE", 
        "name": "Vonck, Janet", 
        "orcid": "0000-0001-5659-8863"
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      {
        "affiliation": "MRC Laboratory of Molecular Biology, UK", 
        "name": "Bai, Xiaochen"
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      {
        "affiliation": "Baylor College of Medicine, USA", 
        "name": "Bell, James"
      }, 
      {
        "affiliation": "Oregon Health Sciences University, USA", 
        "name": "Caputo, Nick"
      }, 
      {
        "affiliation": "Institut de Biologia Molecular de Barcelona, ES", 
        "name": "Chakraborty, Arka", 
        "orcid": "0000-0002-9699-3208"
      }, 
      {
        "affiliation": "Stanford University, USA", 
        "name": "Chen, Dong-Hua"
      }, 
      {
        "affiliation": "Oregon Health Sciences University, USA", 
        "name": "Chen, James"
      }, 
      {
        "affiliation": "HHMI Janelia Research Campus, USA", 
        "name": "Diaz-Avalos, Ruben"
      }, 
      {
        "affiliation": "\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, CH", 
        "name": "Donati, Laurene"
      }, 
      {
        "affiliation": "Institut de Biologie Structurale Grenoble, FR", 
        "name": "Estrozi, Leandro", 
        "orcid": "0000-0003-2548-2547"
      }, 
      {
        "affiliation": "Baylor College of Medicine, USA", 
        "name": "Galaz Montoya, Jesus", 
        "orcid": "0000-0002-0113-9325"
      }, 
      {
        "affiliation": "MRC Laboratory of Molecular Biology, UK", 
        "name": "Gati, Cornelius"
      }, 
      {
        "affiliation": "Centro Nacional de Biotecnolog\u00eda, Madrid, ES", 
        "name": "Gomez-Blanco, Josue", 
        "orcid": "0000-0002-6168-3859"
      }, 
      {
        "affiliation": "HHMI Janelia Research Campus, USA", 
        "name": "Grigorieff, Nikolaus", 
        "orcid": "0000-0002-1506-909X"
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      {
        "affiliation": "Utrecht University, NL", 
        "name": "Gros, Piet"
      }, 
      {
        "affiliation": "National Institutes of Health, USA", 
        "name": "Heymann, Bernard", 
        "orcid": "0000-0002-8872-5326"
      }, 
      {
        "affiliation": "Wadsworth Laboratories, USA", 
        "name": "Leith, ArDean"
      }, 
      {
        "affiliation": "The Scripps Research Institute La Jolla, USA", 
        "name": "Li, Fei"
      }, 
      {
        "affiliation": "Baylor College of Medicine, USA", 
        "name": "Ludtke, Steven", 
        "orcid": "0000-0002-1903-1574"
      }, 
      {
        "affiliation": "Francis Crick Institute, UK", 
        "name": "Nans, Andrea"
      }, 
      {
        "affiliation": "\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, CH", 
        "name": "Nilchian, Masih"
      }, 
      {
        "affiliation": "University of Toronto, CA", 
        "name": "Punjabi, Ali"
      }, 
      {
        "affiliation": "Netherlands Cancer Institute, NL", 
        "name": "Sixma, Titia"
      }, 
      {
        "affiliation": "Max Planck Institute for Biochemistry, Martinsreid, DE", 
        "name": "Tegunov, Dimitry", 
        "orcid": "0000-0001-7019-3221"
      }, 
      {
        "affiliation": "Texas A&M University, USA", 
        "name": "Yang, Kailu"
      }, 
      {
        "affiliation": "Purdue University, USA", 
        "name": "Yu, Guimei"
      }, 
      {
        "affiliation": "Texas A&M University, USA", 
        "name": "Zhang, Junjie"
      }, 
      {
        "affiliation": "Rutgers University, USA", 
        "name": "Sala, Raul", 
        "orcid": "0000-0002-6500-6441"
      }
    ], 
    "description": "<p>Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Map Challenge hosted at challenges.emdatabank.org are deposited.</p>\n\n<p>All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors.</p>\n\n<p>Seven benchmark raw image datasets were selected for the challenge. Six are selected from recently described single particle structure determinations with image data collected as multi-frame movies; one is based on simulated (in silico) images. All of the raw image datasets are archived at pdbe.org/empiar.</p>\n\n<p>27 Challengers created 66 single particle reconstructions from the targets, and then uploaded their results with associated details.&nbsp; 15 of the reconstructions were calculated using the SDSC Gordon supercomputer.</p>\n\n<p>This map challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.</p>\n\n<p>&nbsp;</p>", 
    "doi": "10.5281/zenodo.1120379", 
    "keywords": [
      "cryo electron microscopy", 
      "cryoEM", 
      "validation", 
      "challenge", 
      "benchmark"
    ], 
    "language": "eng", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "notes": "The 2015/2016 Map Challenge was supported by the US National Institutes of Health / National Institute for General Medical Sciences (NIH/NIGMS) Under Grant Number R01 GM079429 to Wah Chiu (PI).  A Directors Award from the UCSD Supercomputer Center provided supercomputer access that was used in 15 of the 66 submitted entries.", 
    "publication_date": "2017-12-21", 
    "references": [
      "Henderson et al (2012) Outcome of the first electron microscopy validation task force meeting. doi:10.1016/j.str.2011.12.014", 
      "Lawson et al (2016) EMDataBank unified data resource for 3DEM. doi:10.1093/nar/gkv1126", 
      "Marabini et al (2016) The Electron Microscopy Exchange (EMX) Iniitiative doi:10.1016/j.jsb.2016.02.008"
    ], 
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  "owners": [
    38522
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  "revision": 8, 
  "updated": "2018-02-27T23:32:47.032521+00:00"
}

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