December 19, 2017 Software Open Access

Nicolas Rodriguez; Andreas Dräger; Mike Hucka; Roman Schulte; Leandro Watanabe; Ibrahim Vazirabad; Alexander Dörr; Piero Dalle Pezze; Clemens Wrzodek; Tramy Nguyen; Thomas Hamm; Florian Mittag; Alex Thomas; Victor Kofia; Jakob Matthes; Jan Rudolph; Lisa Falk; Eugen Netz; Thomas Zajac; Harold Gomez; Alexander Peltzer; Sebastian Nagel

DataCite XML Export

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  <identifier identifierType="DOI">10.5281/zenodo.1118387</identifier>
  <creators>
    <creator>
      <creatorName>Nicolas Rodriguez</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-9290-7894</nameIdentifier>
      <affiliation>Babraham Institute, Cambridge, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Andreas Dräger</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Mike Hucka</creatorName>
      <affiliation>California Institute of Technology</affiliation>
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    <creator>
      <creatorName>Roman Schulte</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Leandro Watanabe</creatorName>
    </creator>
    <creator>
      <creatorName>Ibrahim Vazirabad</creatorName>
    </creator>
    <creator>
      <creatorName>Alexander Dörr</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Piero Dalle Pezze</creatorName>
      <affiliation>The Babraham Institute</affiliation>
    </creator>
    <creator>
      <creatorName>Clemens Wrzodek</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Tramy Nguyen</creatorName>
    </creator>
    <creator>
      <creatorName>Thomas Hamm</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Florian Mittag</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Alex Thomas</creatorName>
      <affiliation>Human Longevity, Inc.</affiliation>
    </creator>
    <creator>
      <creatorName>Victor Kofia</creatorName>
      <affiliation>Princess Margaret Cancer Centre</affiliation>
    </creator>
    <creator>
      <creatorName>Jakob Matthes</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Jan Rudolph</creatorName>
      <affiliation>Phd student at MPI for Biochemistry</affiliation>
    </creator>
    <creator>
      <creatorName>Lisa Falk</creatorName>
      <affiliation>Center for Bioinformatics Tübingen (ZBIT)</affiliation>
    </creator>
    <creator>
      <creatorName>Eugen Netz</creatorName>
    </creator>
    <creator>
      <creatorName>Thomas Zajac</creatorName>
    </creator>
    <creator>
      <creatorName>Harold Gomez</creatorName>
      <affiliation>Boston University/ ETH</affiliation>
    </creator>
    <creator>
      <creatorName>Alexander Peltzer</creatorName>
      <affiliation>@qbicsoftware</affiliation>
    </creator>
    <creator>
      <creatorName>Sebastian Nagel</creatorName>
    </creator>
  </creators>
  <titles>
    <title>sbmlteam/jsbml: JSBML-1.3.1</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <dates>
    <date dateType="Issued">2017-12-19</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1118387</alternateIdentifier>
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  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/sbmlteam/jsbml/tree/jsbml-1.3.1</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.595308</relatedIdentifier>
  </relatedIdentifiers>
  <version>jsbml-1.3.1</version>
  <rightsList>
    <rights rightsURI="https://opensource.org/licenses/LGPL-2.1">GNU Lesser General Public License v2.1 only</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;We are pleased to announce the release of JSBML-1.3.1, which is now available for download from &lt;a href="https://github.com/sbmlteam/jsbml/releases/tag/jsbml-1.3.1"&gt;GitHub&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating &lt;a href="http://sbml.org"&gt;SBML&lt;/a&gt; files and data streams. It is an alternative to the mixed Java/native code-based interface provided in &lt;a href="http://sbml.org/Software/libSBML"&gt;libSBML&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;For more details, please visit the JSBML project home page:&lt;/p&gt;

&lt;p&gt;&lt;a href="http://sbml.org/Software/JSBML"&gt;http://sbml.org/Software/JSBML&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;The main new feature in this release is the support for SBML Level 3 Version 2 and the development of the offline validator. We have also started to write some converters that transform SBML documents. In particular, a converter that expands function definitions that was requested several times by our community. Some very good progress were made on the offline validator, you can get a &lt;a href="https://github.com/sbmlteam/jsbml/wiki/Offline-validator-status"&gt;detailed report&lt;/a&gt; of what is left to be done in a separate wiki page. Since last release we made the offline validator more user friendly by provided error messages similar to libSBML with a first part that explain the specification and a second part that describe the element and why it failed the rule. We hope to have the offline validator complete by the end of next year when it will be used by default.&lt;/p&gt;

&lt;p&gt;You can find a detailed list of the user-visible new features and bug fixes since JSBML version 1.2 on the &lt;a href="https://github.com/sbmlteam/jsbml/blob/jsbml-1.3.1/NEWS.md"&gt;NEWS&lt;/a&gt; file.&lt;/p&gt;

&lt;p&gt;Thank you for your interest and support of JSBML and SBML in general.&lt;/p&gt;

&lt;p&gt;The JSBML team.&lt;/p&gt;</description>
  </descriptions>
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