Dataset Open Access

Clover v3 assembly

Dudchenko, Olga; Pham, Melanie; Lui, Christopher; Bayer, Philipp Emanuel; Erskine, William; Aiden, Erez Lieberman; Kaur, Parwinder


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{
  "description": "<p>We present an assembly of the genome of subterranean clover, <em>Trifolium subterraneum</em>, an important pasture legume. Specifically, <em>in situ</em> Hi-C data (48X) was used to correct misjoins and anchor, order, and orient scaffolds in a previously published genome assembly (TSUd_r1.1; scaffold N50: 287kb). This resulted in an improved genome assembly (TrSub3; scaffold N50: 56Mb) containing eight chromosome-length scaffolds that span 95% of the sequenced bases in the input assembly.</p>", 
  "license": "http://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA., Center for Theoretical and Biological Physics, Rice University, Houston, TX 77030, USA.", 
      "@type": "Person", 
      "name": "Dudchenko, Olga"
    }, 
    {
      "affiliation": "The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA", 
      "@type": "Person", 
      "name": "Pham, Melanie"
    }, 
    {
      "affiliation": "The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.", 
      "@type": "Person", 
      "name": "Lui, Christopher"
    }, 
    {
      "affiliation": "School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia", 
      "@id": "https://orcid.org/0000-0001-8530-3067", 
      "@type": "Person", 
      "name": "Bayer, Philipp Emanuel"
    }, 
    {
      "affiliation": "Centre for Plant Genetics and Breeding, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia, Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia", 
      "@type": "Person", 
      "name": "Erskine, William"
    }, 
    {
      "affiliation": "The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA., Center for Theoretical and Biological Physics, Rice University, Houston, TX 77030, USA., Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.", 
      "@type": "Person", 
      "name": "Aiden, Erez Lieberman"
    }, 
    {
      "affiliation": "Centre for Plant Genetics and Breeding, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia", 
      "@id": "https://orcid.org/0000-0003-0201-0766", 
      "@type": "Person", 
      "name": "Kaur, Parwinder"
    }
  ], 
  "url": "https://zenodo.org/record/1095215", 
  "datePublished": "2017-12-07", 
  "version": "v3.0", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/0cec5419-fff1-4fff-8860-633e251b555d/TrSub3.fasta", 
      "@type": "DataDownload", 
      "fileFormat": "fasta"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/0cec5419-fff1-4fff-8860-633e251b555d/TrSubv3.cds.fa", 
      "@type": "DataDownload", 
      "fileFormat": "fa"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/0cec5419-fff1-4fff-8860-633e251b555d/TrSubv3.gff3", 
      "@type": "DataDownload", 
      "fileFormat": "gff3"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/0cec5419-fff1-4fff-8860-633e251b555d/TrSubv3.pep.fa", 
      "@type": "DataDownload", 
      "fileFormat": "fa"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.1095215", 
  "@id": "https://doi.org/10.5281/zenodo.1095215", 
  "@type": "Dataset", 
  "name": "Clover v3 assembly"
}
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