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Published November 24, 2017 | Version v0.4.02
Software Open

BART: version 0.4.02

  • 1. University Medical Center Göttingen
  • 2. University of California, Berkeley
  • 1. University Medical Center Göttingen
  • 2. University of Oxford
  • 3. Massachusetts Institute of Technology
  • 4. Lund University
  • 5. Intel Corporation

Description

The Berkeley Advanced Reconstruction Toolbox (BART) is a framework for image reconstruction in Magnet Resonance Imaging (MRI). It consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of iterative optimization algorithms. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of many calibration and reconstruction algorithms for MRI.

Changes:

  • new tools: std var vec wavepsf whiten
  • std: compute standard deviation (Jonathan Tamir)
  • var: compute variance (Jonathan Tamir)
  • vec: create vectors from the command line
  • wavepsf: create PSF for wave acquisition (Siddharth Iyer)
  • whiten: compute/apply whitening matrix (Jonathan Tamir)
  • pics: basis pursuit formulation (Jonathan Tamir)
  • nlinv: support for simultaneous multi-slice (Sebastian Rosenzweig)
  • nlinv: various enhancements and fixes (Christian Holme)
  • pics: support for simultaneous multi-slice (Sebastian Rosenzweig)
  • traj: radial simultaneous multi-slice trajectories (Sebastian Rosenzweig)
  • fft: uncentered option (Jonathan Tamir)
  • nufft: use Toepliz-mode by default
  • nufft: add GPU option
  • python 3 version for bartview (Siddharth Iyer)
  • fix compilation for Cygwin on Windows (Johannes Töger)
  • include relevant parts of LAPACKE in BART
  • library: add NIHT algorithm (Sofia Dimoudi)
  • library: add Chambolle-Pock primal dual algorithm for F(Ax) + G(x) (Jonathan Tamir)
  • library: add md_zss function for sum-of-squares (Jonathan Tamir)
  • library: improved parallelization (Michael Anderson)
  • library: joint l1-wavelet regularization
  • library: rename wavelet3 to wavelet
  • library: Hamming and Hann windows (Jonathan Tamir)
  • library: png write functions (Christian Holme)
  • library: initial interface for nonlinear operators
  • many other bug fixes and improvements

Files

mrirecon/bart-v0.4.02.zip

Files (668.9 kB)

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Additional details

References

  • Uecker, Martin et al. (2015), Berkeley Advanced Reconstruction Toolbox, Annual Meeting ISMRM, Toronto 2015, In Proc. Intl. Soc. Mag. Reson. Med 23; 2486