BART: version 0.4.02
Creators
- 1. University Medical Center Göttingen
- 2. University of California, Berkeley
Contributors
- 1. University Medical Center Göttingen
- 2. University of Oxford
- 3. Massachusetts Institute of Technology
- 4. Lund University
- 5. Intel Corporation
Description
The Berkeley Advanced Reconstruction Toolbox (BART) is a framework for image reconstruction in Magnet Resonance Imaging (MRI). It consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of iterative optimization algorithms. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of many calibration and reconstruction algorithms for MRI.
Changes:
- new tools: std var vec wavepsf whiten
- std: compute standard deviation (Jonathan Tamir)
- var: compute variance (Jonathan Tamir)
- vec: create vectors from the command line
- wavepsf: create PSF for wave acquisition (Siddharth Iyer)
- whiten: compute/apply whitening matrix (Jonathan Tamir)
- pics: basis pursuit formulation (Jonathan Tamir)
- nlinv: support for simultaneous multi-slice (Sebastian Rosenzweig)
- nlinv: various enhancements and fixes (Christian Holme)
- pics: support for simultaneous multi-slice (Sebastian Rosenzweig)
- traj: radial simultaneous multi-slice trajectories (Sebastian Rosenzweig)
- fft: uncentered option (Jonathan Tamir)
- nufft: use Toepliz-mode by default
- nufft: add GPU option
- python 3 version for bartview (Siddharth Iyer)
- fix compilation for Cygwin on Windows (Johannes Töger)
- include relevant parts of LAPACKE in BART
- library: add NIHT algorithm (Sofia Dimoudi)
- library: add Chambolle-Pock primal dual algorithm for F(Ax) + G(x) (Jonathan Tamir)
- library: add md_zss function for sum-of-squares (Jonathan Tamir)
- library: improved parallelization (Michael Anderson)
- library: joint l1-wavelet regularization
- library: rename wavelet3 to wavelet
- library: Hamming and Hann windows (Jonathan Tamir)
- library: png write functions (Christian Holme)
- library: initial interface for nonlinear operators
- many other bug fixes and improvements
Files
mrirecon/bart-v0.4.02.zip
Files
(668.9 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/mrirecon/bart/tree/v0.4.02 (URL)
- 10.1002/mrm.26191 (DOI)
- 10.1002/mrm.26878 (DOI)
- 10.1002/mrm.24751 (DOI)
References
- Uecker, Martin et al. (2015), Berkeley Advanced Reconstruction Toolbox, Annual Meeting ISMRM, Toronto 2015, In Proc. Intl. Soc. Mag. Reson. Med 23; 2486