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Published November 20, 2017 | Version 2.0.8
Software Open

GMOD/Apollo: Apollo2.0.8(JB#d3827c)

  • 1. Lawrence Berkeley National Lab
  • 2. Lawrence Berkeley National Laboratory
  • 3. @BackofenLab
  • 4. BIPAA/GenOuest
  • 5. Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
  • 6. OHSU Computational Biology Department
  • 7. UC Berkeley
  • 8. Gitter
  • 9. Uni of Cambridge / PomBase

Description

Official Release

Apollo 2.0.8

Some of the new features include:

  • added ability to annotate canvas BAM tracks
  • expanded track services
  • support for indexed FASTA as a reference sequence

Some important bug fixes:

  • numerous fixes to track web services
  • fixed numerous build issues

Note You will need to install node 6 or better.
Note If updating your jbrowse settings from previous versions in apollo-config.groovy you will need to set the JBrowse to use the currently tagged version or better. If this is commented out, however, the default will work. Note Some issues with new tomcat and addStore / addTracks RFC 7230 and RFC 3986. See http://genomearchitect.readthedocs.io/en/latest/Setup.html?highlight=RFC#json-in-the-url-with-newer-versions-of-tomcat

The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/

Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list (apollo@lists.lbl.gov) and archive.

Files

GMOD/Apollo-2.0.8.zip

Files (88.8 MB)

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Additional details

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