Dataset Open Access

FCWB Template Brain

Ostrovsky, Aaron D.; Jefferis, Gregory S. X. E


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.10568">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.10568</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.10568"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Ostrovsky, Aaron D.</foaf:name>
        <foaf:givenName>Aaron D.</foaf:givenName>
        <foaf:familyName>Ostrovsky</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>MRC Laboratory of Molecular Biology</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Jefferis, Gregory S. X. E</foaf:name>
        <foaf:givenName>Gregory S. X. E</foaf:givenName>
        <foaf:familyName>Jefferis</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>MRC Laboratory of Molecular Biology</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>FCWB Template Brain</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2014</dct:issued>
    <dcat:keyword>drosophila</dcat:keyword>
    <dcat:keyword>neuroanatomy</dcat:keyword>
    <frapo:isFundedBy rdf:resource="info:eu-repo/grantAgreement/EC/FP7/211089/"/>
    <schema:funder>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/501100000780</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </schema:funder>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2014-06-18</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/10568"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/10568</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/drosophila"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/zenodo"/>
    <dct:description>&lt;p&gt;The template brain (FCWB) was constructed by screening for whole brains within the FlyCircuit dataset, and manually selecting a pool of brains that appeared of good quality when the stacks were inspected. Separate average female and average male template brains were constructed from 17 and 9 brains, respectively using the CMTK (http://www.nitrc.org/projects/cmtk) avg_adm function which takes a single brain as a seed. After five iterations the resultant average male and average female brains were placed in an affine symmetric position within their image stacks so that a simple horizontal (x -axis) flip of either template brain resulted in an almost perfect overlap of left and right hemispheres. Finally the two sex-specific template brains were then averaged (with equal weight) to make an intersex template brain using the same procedure. Since the purpose of this template was to provide an optimal registration target for the flycircuit.tw dataset, no attempt was made to correct for the obvious disparity between the XY and Z voxel dimensions common to all the images in the dataset. The scripts used for the construction of the template are available at https://github.com/jefferislab/MakeAverageBrain.&lt;/p&gt; &lt;p&gt;Images from FlyCircuit were obtained from the NCHC (National Center for High-performance Computing)&amp;nbsp;and NTHU (National Tsing Hua University), Hsinchu, Taiwan.&amp;nbsp;If you use this template brain, to acknowledge the original raw data,&amp;nbsp;&lt;strong&gt;please ensure that you additionally cite&lt;/strong&gt;:&lt;/p&gt; &lt;p&gt;Three-dimensional reconstruction of brain-wide wiring networks in&amp;nbsp;&lt;em&gt;Drosophila&lt;/em&gt;&amp;nbsp;at single-cell resolution&lt;/p&gt; &lt;p&gt;Ann-Shyn Chiangemail, Chih-Yung Lin11, Chao-Chun Chuang11, Hsiu-Ming Chang11, Chang-Huain Hsieh11, Chang-Wei Yeh, Chi-Tin Shih, Jian-Jheng Wu, Guo-Tzau Wang, Yung-Chang Chen, Cheng-Chi Wu, Guan-Yu Chen, Yu-Tai Ching, Ping-Chang Lee, Chih-Yang Lin, Hui-Hao Lin, Chia-Chou Wu, Hao-Wei Hsu, Yun-Ann Huang, Jing-Yi Chen, Hsin-Jung Chiang, Chun-Fang Lu, Ru-Fen Ni, Chao-Yuan Yeh, Jenn-Kang Hwang&lt;/p&gt; &lt;p&gt;Current Biology 2011, 21:1-11.&amp;nbsp;http://dx.doi.org/10.1016/j.cub.2010.11.056&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.10568"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.10568</dcat:accessURL>
        <dcat:byteSize>35131871</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/10568/files/FCWB.nrrd</dcat:downloadURL>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
  <foaf:Project rdf:about="info:eu-repo/grantAgreement/EC/FP7/211089/">
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">211089</dct:identifier>
    <dct:title>Neural Basis of Olfactory Perception in Drosophila</dct:title>
    <frapo:isAwardedBy>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/501100000780</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </frapo:isAwardedBy>
  </foaf:Project>
</rdf:RDF>
464
58
views
downloads
All versions This version
Views 464466
Downloads 5858
Data volume 2.0 GB2.0 GB
Unique views 427429
Unique downloads 5555

Share

Cite as