Dataset Open Access

Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Alla Mikheenko, Andrey Prjibelski, Vladislav Saveliev, Dmitry Antipov, and Alexey Gurevich


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  <identifier identifierType="DOI">10.5281/zenodo.1050296</identifier>
  <creators>
    <creator>
      <creatorName>Alla Mikheenko, Andrey Prjibelski, Vladislav Saveliev, Dmitry Antipov, and Alexey Gurevich</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-5855-3519</nameIdentifier>
      <affiliation>Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Genome Assemblies For "Versatile Genome Assembly Evaluation With Quast-Lg"</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>genome assembly, genome assembly evaluation</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-11-08</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1050296</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsPartOf">10.5281/zenodo.1050295</relatedIdentifier>
  </relatedIdentifiers>
  <version>1.0.0</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Genome assemblies of&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;Yeast (S. cerevisiae, genome size: 12.1 Mb): ABruijn, Canu, FALCON, MaSuRCA (from Illumina pair-ends and PacBio)&lt;/li&gt;
	&lt;li&gt;Worm (C. elegans,genome size: 100.3 Mb): ABruijn, Canu, FALCON, MaSuRCA (from Illumina pair-ends and PacBio)&lt;/li&gt;
	&lt;li&gt;Fruit fly (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, MEGAHIT, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)&lt;/li&gt;
&lt;/ol&gt;

&lt;p&gt;Each pack is accompanied with the theoretically optimal assembly created with QUAST-LG. For more information please visit http://cab.spbu.ru/software/quast-lg/ or write to &lt;em&gt;quast.support@cab.spbu.ru.&lt;/em&gt;&lt;/p&gt;</description>
  </descriptions>
</resource>

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