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Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos

Lobachev, Oleg; Steiniger, Birte S.


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  <identifier identifierType="DOI">10.5281/zenodo.1039241</identifier>
  <creators>
    <creator>
      <creatorName>Lobachev, Oleg</creatorName>
      <givenName>Oleg</givenName>
      <familyName>Lobachev</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7193-6258</nameIdentifier>
      <affiliation>University Bayreuth</affiliation>
    </creator>
    <creator>
      <creatorName>Steiniger, Birte S.</creatorName>
      <givenName>Birte S.</givenName>
      <familyName>Steiniger</familyName>
      <affiliation>Philipps-University Marburg</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>human spleen</subject>
    <subject>3D reconstruction</subject>
    <subject>immunohistology</subject>
    <subject>capillary networks</subject>
    <subject>white pulp</subject>
    <subject>marginal zone</subject>
    <subject>follicle</subject>
    <subject>3D</subject>
    <subject>virtual reality</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-07-20</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Audiovisual"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1039241</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsSupplementTo">10.1371/journal.pone.0191019</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.832862</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by-sa/4.0/legalcode">Creative Commons Attribution Share Alike 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;We regard ROIs, regions of interest, from a human spleen specimen in single (four ROIs)&amp;nbsp;and double (three ROIs) staining. The ROIs with the same number correspond to each other. Below we map references in manuscript (&lt;strong&gt;bold&lt;/strong&gt;) to file names in this repository (&lt;em&gt;italics&lt;/em&gt;).&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;File &lt;em&gt;colour-deconvolution.png&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;settings of colour deconvolution in Fiji for double staining.&lt;/li&gt;
	&lt;li&gt;File &lt;em&gt;comments to videos.odt&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;a commentary to S3[c,d] Video.&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S1a,b Video to S3a,b Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3][a,b].mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;sequence of section with single (a) and double (b) staining for ROI 1 to 3&amp;nbsp;in the main text.&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S1c Video to S3c Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3]c.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;video of the reconstruction, single staining, special blood vessels highlighted.&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S1d Video to S4d Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3]d.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;an overview video of the reconstruction, double staining.&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S4 Video&lt;/strong&gt;: file &lt;em&gt;video_4.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;quality control in virtual reality.&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S1 Figure&lt;/strong&gt;: a supplementary figure&amp;nbsp;&lt;em&gt;fig_S1.tiff&lt;/em&gt;&amp;nbsp; and its caption &lt;em&gt;fig_S1_legend.odt&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;S2&amp;nbsp;Figure&lt;/strong&gt;: a supplementary figure&amp;nbsp;&lt;em&gt;fig_S2.tiff&lt;/em&gt;&amp;nbsp; and its caption &lt;em&gt;fig_S2_legend.odt&lt;/em&gt;&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;This data corresponds to the&amp;nbsp;publication &amp;quot;Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections&amp;quot; by B. S. Steiniger, C. Ulrich, M. Berthold, M. Guthe, and O. Lobachev, 2017.&lt;/p&gt;</description>
  </descriptions>
</resource>
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