Video/Audio Open Access
Lobachev, Oleg;
Steiniger, Birte S.
<?xml version='1.0' encoding='utf-8'?> <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd"> <identifier identifierType="DOI">10.5281/zenodo.1039241</identifier> <creators> <creator> <creatorName>Lobachev, Oleg</creatorName> <givenName>Oleg</givenName> <familyName>Lobachev</familyName> <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7193-6258</nameIdentifier> <affiliation>University Bayreuth</affiliation> </creator> <creator> <creatorName>Steiniger, Birte S.</creatorName> <givenName>Birte S.</givenName> <familyName>Steiniger</familyName> <affiliation>Philipps-University Marburg</affiliation> </creator> </creators> <titles> <title>Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos</title> </titles> <publisher>Zenodo</publisher> <publicationYear>2017</publicationYear> <subjects> <subject>human spleen</subject> <subject>3D reconstruction</subject> <subject>immunohistology</subject> <subject>capillary networks</subject> <subject>white pulp</subject> <subject>marginal zone</subject> <subject>follicle</subject> <subject>3D</subject> <subject>virtual reality</subject> </subjects> <dates> <date dateType="Issued">2017-07-20</date> </dates> <language>en</language> <resourceType resourceTypeGeneral="Audiovisual"/> <alternateIdentifiers> <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1039241</alternateIdentifier> </alternateIdentifiers> <relatedIdentifiers> <relatedIdentifier relatedIdentifierType="DOI" relationType="IsSupplementTo">10.1371/journal.pone.0191019</relatedIdentifier> <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.832862</relatedIdentifier> </relatedIdentifiers> <rightsList> <rights rightsURI="https://creativecommons.org/licenses/by-sa/4.0/legalcode">Creative Commons Attribution Share Alike 4.0 International</rights> <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights> </rightsList> <descriptions> <description descriptionType="Abstract"><p>We regard ROIs, regions of interest, from a human spleen specimen in single (four ROIs)&nbsp;and double (three ROIs) staining. The ROIs with the same number correspond to each other. Below we map references in manuscript (<strong>bold</strong>) to file names in this repository (<em>italics</em>).</p> <ul> <li>File <em>colour-deconvolution.png</em>&nbsp;&ndash;&nbsp;settings of colour deconvolution in Fiji for double staining.</li> <li>File <em>comments to videos.odt</em>&nbsp;&ndash;&nbsp;a commentary to S3[c,d] Video.</li> <li><strong>S1a,b Video to S3a,b Video</strong>: files <em>video_[1,2,3][a,b].mov</em>&nbsp;&ndash;&nbsp;sequence of section with single (a) and double (b) staining for ROI 1 to 3&nbsp;in the main text.</li> <li><strong>S1c Video to S3c Video</strong>: files <em>video_[1,2,3]c.mov</em>&nbsp;&ndash;&nbsp;video of the reconstruction, single staining, special blood vessels highlighted.</li> <li><strong>S1d Video to S4d Video</strong>: files <em>video_[1,2,3]d.mov</em>&nbsp;&ndash;&nbsp;an overview video of the reconstruction, double staining.</li> <li><strong>S4 Video</strong>: file <em>video_4.mov</em>&nbsp;&ndash;&nbsp;quality control in virtual reality.</li> <li><strong>S1 Figure</strong>: a supplementary figure&nbsp;<em>fig_S1.tiff</em>&nbsp; and its caption <em>fig_S1_legend.odt</em></li> <li><strong>S2&nbsp;Figure</strong>: a supplementary figure&nbsp;<em>fig_S2.tiff</em>&nbsp; and its caption <em>fig_S2_legend.odt</em></li> </ul> <p>This data corresponds to the&nbsp;publication &quot;Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections&quot; by B. S. Steiniger, C. Ulrich, M. Berthold, M. Guthe, and O. Lobachev, 2017.</p></description> </descriptions> </resource>
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