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Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos

Lobachev, Oleg; Steiniger, Birte S.


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    <dcat:keyword>human spleen</dcat:keyword>
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    <dcat:keyword>immunohistology</dcat:keyword>
    <dcat:keyword>capillary networks</dcat:keyword>
    <dcat:keyword>white pulp</dcat:keyword>
    <dcat:keyword>marginal zone</dcat:keyword>
    <dcat:keyword>follicle</dcat:keyword>
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    <dct:description>&lt;p&gt;We regard ROIs, regions of interest, from a human spleen specimen in single (four ROIs)&amp;nbsp;and double (three ROIs) staining. The ROIs with the same number correspond to each other. Below we map references in manuscript (&lt;strong&gt;bold&lt;/strong&gt;) to file names in this repository (&lt;em&gt;italics&lt;/em&gt;).&lt;/p&gt; &lt;ul&gt; &lt;li&gt;File &lt;em&gt;colour-deconvolution.png&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;settings of colour deconvolution in Fiji for double staining.&lt;/li&gt; &lt;li&gt;File &lt;em&gt;comments to videos.odt&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;a commentary to S3[c,d] Video.&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S1a,b Video to S3a,b Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3][a,b].mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;sequence of section with single (a) and double (b) staining for ROI 1 to 3&amp;nbsp;in the main text.&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S1c Video to S3c Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3]c.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;video of the reconstruction, single staining, special blood vessels highlighted.&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S1d Video to S4d Video&lt;/strong&gt;: files &lt;em&gt;video_[1,2,3]d.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;an overview video of the reconstruction, double staining.&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S4 Video&lt;/strong&gt;: file &lt;em&gt;video_4.mov&lt;/em&gt;&amp;nbsp;&amp;ndash;&amp;nbsp;quality control in virtual reality.&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S1 Figure&lt;/strong&gt;: a supplementary figure&amp;nbsp;&lt;em&gt;fig_S1.tiff&lt;/em&gt;&amp;nbsp; and its caption &lt;em&gt;fig_S1_legend.odt&lt;/em&gt;&lt;/li&gt; &lt;li&gt;&lt;strong&gt;S2&amp;nbsp;Figure&lt;/strong&gt;: a supplementary figure&amp;nbsp;&lt;em&gt;fig_S2.tiff&lt;/em&gt;&amp;nbsp; and its caption &lt;em&gt;fig_S2_legend.odt&lt;/em&gt;&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;This data corresponds to the&amp;nbsp;publication &amp;quot;Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections&amp;quot; by B. S. Steiniger, C. Ulrich, M. Berthold, M. Guthe, and O. Lobachev, 2017.&lt;/p&gt;</dct:description>
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