Preview

JMbayes-v0.8.70.zip

drizopoulos-JMbayes-1be72f3
- .Rbuildignore 55 Bytes
- .Rproj.user
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    - build_options 126 Bytes
    - cpp-definition-cache 3 Bytes
    - pcs
      - debug-breakpoints.pper 77 Bytes
      - files-pane.pper 178 Bytes
      - source-pane.pper 23 Bytes
      - windowlayoutstate.pper 295 Bytes
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    - persistent-state 1.9 kB
    - saved_source_markers 27 Bytes
    - sdb
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        INDEX 6.1 kB
- .gitattributes 121 Bytes
- .gitignore 71 Bytes
- .travis.yml 407 Bytes
- DESCRIPTION 714 Bytes
- JMbayes.Rproj 303 Bytes
- JSSpaper
  - v72i07.R 9.6 kB
  - v72i07.pdf 943.8 kB
- NAMESPACE 3.6 kB
- R
  - JAGSmodel.R 6.8 kB
  - MCMCfit.R 62.8 kB
  - ModelMats.R 2.2 kB
  - NextVisit.R 4.6 kB
  - RcppExports.R 2.8 kB
  - S.b.R 1.9 kB
  - STANmodels.R 8.8 kB
  - adjustKRW.R 257 Bytes
  - adjustScaleRW.R 668 Bytes
  - anova.JMbayes.R 647 Bytes
  - aucJM.JMbayes.R 6.6 kB
  - aucJM.R 76 Bytes
  - aucJM.coxph.R 5.3 kB
  - aucJM.mvJMbayes.R 6.4 kB
  - bdiag.R 745 Bytes
  - blockUpdate.R 744 Bytes
  - bma.combine.R 1.7 kB
  - cd.R 370 Bytes
  - cd.vec.R 398 Bytes
  - check_td.R 93 Bytes
  - chol.transf.R 529 Bytes
  - coef.JMbayes.R 852 Bytes
  - coef.summary.JMbayes.R 285 Bytes
  - computeP.R 106 Bytes
  - confint.JMbayes.R 1.3 kB
  - crLong.R 528 Bytes
  - cvDCL.R 713 Bytes
  - dataLM.R 1.5 kB
  - dbs.R 836 Bytes
  - dgbeta.R 233 Bytes
  - dgt.R 212 Bytes
  - dmvnorm.R 1.2 kB
  - dmvt.R 1.4 kB
  - dns.R 800 Bytes
  - draw.stick.R 3.4 kB
  - dropAttr.R 503 Bytes
  - dwish.R 681 Bytes
  - dynCJM.JMbayes.R 1.9 kB
  - dynCJM.R 74 Bytes
  - dynCJM.coxph.R 2.8 kB
  - dynInfo.R 12.4 kB
  - dynPred_lme.R 6.1 kB
  - effectiveSize.R 717 Bytes
  - expected_failure_time.R 1.6 kB
  - extractFrames.R 13.2 kB
  - extractInits.R 376 Bytes
  - extractPriors.R 276 Bytes
  - fastSumID.R 116 Bytes
  - fastSumID2.R 164 Bytes
  - fd.R 345 Bytes
  - fd.vec.R 373 Bytes
  - find_positions.R 258 Bytes
  - fitted.JMbayes.R 4.5 kB
  - fixNames.R 3.5 kB
  - fixef.JMbayes.R 638 Bytes
  - format.perc.R 148 Bytes
  - format.pval2.R 1.2 kB
  - gaussKronrod.R 1.6 kB
  - gaussLegendre.R 11.1 kB
  - globals.R 736 Bytes
  - hMats.R 1.8 kB
  - hessian.JMbayes.R 1.1 kB
  - ibs.R 1.4 kB
  - initSurv_mvJointModelBayes.R 1.2 kB
  - initSurvival.R 6.3 kB
  - ins.R 1.3 kB
  - jointModelBayes.R 26.7 kB
  - log.posterior.b.R 2.2 kB
  - logLik.JMbayes.R 7.7 kB
  - logh.b.R 1.6 kB
  - makepredictcall.dbs.R 243 Bytes
  - makepredictcall.dns.R 243 Bytes
  - makepredictcall.ibs.R 258 Bytes
  - makepredictcall.ins.R 258 Bytes
  - margLogLik2.R 6.2 kB
  - marglogLik.R 9.0 kB
  - methods_mvJointModelBayes.R 12.5 kB
  - modes.R 174 Bytes
  - mvJointModelBayes.R 37.7 kB
  - mv_glmer.R 19.4 kB
  - nearPD.R 1.4 kB
  - pgt.R 101 Bytes
  - plot.JMbayes.R 2.1 kB
  - plot.rocJM.R 792 Bytes
  - plot.survfit.JMbayes.R 5.7 kB
  - prederrJM.JMbayes.R 5.8 kB
  - prederrJM.R 92 Bytes
  - prederrJM.coxph.R 4.1 kB
  - prederrJM.mvJMbayes.R 5.8 kB
  - predict.JMbayes.R 13.4 kB
  - predict_eventTime.R 3.3 kB
  - print.JMbayes.R 2.0 kB
  - print.aucJM.R 603 Bytes
  - print.dynCJM.R 566 Bytes
  - print.prederrJM.R 887 Bytes
  - print.rocJM.R 837 Bytes
  - print.summary.JMbayes.R 4.7 kB
  - print.survfit.JMbayes.R 555 Bytes
  - printCall.R 249 Bytes
  - qgt.R 99 Bytes
  - ranef.JMbayes.R 281 Bytes
  - residuals.JMbayes.R 1.4 kB
  - rgt.R 99 Bytes
  - rmvnorm.R 453 Bytes
  - rmvt.R 470 Bytes
  - rocJM.JMbayes.R 4.0 kB
  - rocJM.R 76 Bytes
  - rocJM.mvJMbayes.R 4.5 kB
  - rowMedians.R 73 Bytes
  - runDynPred.R 412 Bytes
  - slice.shape.R 1.2 kB
  - slice.tau.R 606 Bytes
  - smilyface.R 3.7 kB
  - stdErr.R 128 Bytes
  - summary.JMbayes.R 2.6 kB
  - supportFuns_mvJointModelBayes.R 2.2 kB
  - survPriors.R 1.1 kB
  - survfitJM.JMbayes.R 12.6 kB
  - survfitJM.R 76 Bytes
  - survfitJM.mvJMbayes.R 31.3 kB
  - survivalFun.R 4.8 kB
  - td_effect.R 791 Bytes
  - trimAboveMean.R 174 Bytes
  - update.JMbayes.R 881 Bytes
  - vcov.JMbayes.R 92 Bytes
  - xtable.JMbayes.R 3.3 kB
- README.md 5.7 kB
- data
  - aids.id.rda 6.9 kB
  - aids.rda 16.3 kB
  - pbc2.id.rda 12.8 kB
  - pbc2.rda 45.0 kB
  - prothro.rda 42.5 kB
  - prothros.rda 4.8 kB
- inst
  - CITATION 816 Bytes
  - NEWS 6.7 kB
  - doc
    - Dynamic_Predictions.html 157.4 kB
    - Multivariate_Joint_Models.html 60.3 kB
  - shiny_app_JM
    - global.R 489 Bytes
    - server.R 38.7 kB
    - ui.R 2.5 kB
    - white_space.Rhtml 113 Bytes
  - shiny_app_lme
    - global.R 99 Bytes
    - server.R 5.5 kB
    - ui.R 1.5 kB
- man
  - DerivIntSplines.Rd 1.5 kB
  - IndvPred.Rd 3.1 kB
  - JMbayes.Rd 4.3 kB
  - JMbayesObject.Rd 3.0 kB
  - aids.Rd 2.2 kB
  - anova.Rd 1.9 kB
  - aucJM.Rd 7.6 kB
  - bma.combine.Rd 2.3 kB
  - coef.Rd 2.0 kB
  - cvDCL.Rd 2.8 kB
  - dynCJM.Rd 5.9 kB
  - dynInfo.Rd 3.8 kB
  - fitted.Rd 3.1 kB
  - gt.Rd 1.2 kB
  - jointModelBayes.Rd 19.6 kB
  - logLik.Rd 4.1 kB
  - marglogLik.Rd 2.2 kB
  - mvJointModelBayes.Rd 17.4 kB
  - mvglmer.Rd 5.7 kB
  - pbc.Rd 2.6 kB
  - plot-survfitJM.Rd 6.9 kB
  - plot.Rd 1.7 kB
  - prederrJM.Rd 7.0 kB
  - predict.Rd 6.5 kB
  - prothro.Rd 1.0 kB
  - ranef.Rd 1.4 kB
  - runDynPred.Rd 578 Bytes
  - survfitJM.Rd 9.9 kB
  - tve.Rd 654 Bytes
  - xtable.Rd 1.8 kB
- src
  - Makevars 126 Bytes
  - Makevars.win 126 Bytes
  - RcppExports.cpp 16.4 kB
  - fast_LAPRWM.cpp 61.7 kB
  - fast_dmvnorm.cpp 802 Bytes
  - fast_logPost.cpp 2.3 kB
  - fast_score.cpp 4.0 kB
  - survfitJM_mvJMbayes.cpp 11.7 kB