1038045
doi
10.5281/zenodo.1038045
oai:zenodo.org:1038045
Victor Kofia
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Alexander Maru
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Mark Freeman
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Chantal Ho
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Nehme El-Hachem
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
George-Alexandru Adam
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Wail Ba-alawi
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Zhaleh Safikhani
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
PharmacoDB-1.0.0
Petr Smirnov
Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
info:eu-repo/semantics/openAccess
GNU General Public License v2.0 only
https://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
pharmacodb
cell-lines
drug-targets
drug-dose-response-curves
<p>PharmacoDB allows scientists to search across publicly available datasets to find instances where a drug or cell line of interest has been profiled, and to view and compare the dose-response data for a specific cell line - drug pair from any of the studies included in the database.</p>
<p>We are providing full access to the contents of the first stable release of PharmacoDB and are distributing the data as a MySQL dump. Making our research fully reproducible is part of the mission of the Haibe-Kains laboratory.</p>
<p>The existing dump can be made <em>PostgreSQL</em> compatible by following the instructions below:</p>
<p>Step 1: Install Docker (https://www.docker.com/)</p>
<p>Step 2: Run the commands below</p>
<p>sudo docker pull bhklab/pharmacodb:1.0.0</p>
<p>sudo docker run -d -p 3000:3000 -v ~:/home -it --name pharmacodb_v1.0.0 --entrypoint /bin/bash bhklab/pharmacodb:1.0.0</p>
<p>sudo docker exec -it --user root pharmacodb_v1.0.0 /usr/src/app/data/mysql_to_postgres</p>
<p>The new PostgreSQL compatible dump will be available in your home directory as 'pharmacodb_development.psql'. </p>
<p><em>Update</em></p>
<p><em>Version 1 of this dataset did not contain the HARA cell-line annotation correction (tissue type is lung and not breast). Our apologies for any inconvenience. Please use and cite Version 2 instead.</em></p>
<p>For more information, please visit https://pharmacodb.pmgenomics.ca</p>
Zenodo
2017-10-09
info:eu-repo/semantics/other
1027720
1579893916.963841
1768876162
md5:954e5267c471f0ddd1839739f71e7ad0
https://zenodo.org/records/1038045/files/pharmacoDB-1.0.0.sql
1768876160
md5:4fa4beaaf561468ac6bfef36b3a4dbf5
https://zenodo.org/records/1038045/files/pharmacodb-1.0.0.sql
public
10.5281/zenodo.1027720
isVersionOf
doi