Published October 23, 2017 | Version 0.1.1
Software Open

cerebis/sim3C: Small update to deal with IUPAC ambiguity codes.

Creators

  • 1. ithree institute
  • 2. University of Technology Sydney

Description

Modelling of base calling errors within Art.py does not currently support ambiguous symbols besides N.

This release adds the following support:

  • informative error reporting when reference sequences contains symbols other than ACGTN.
  • new command line option --convert filters references in memory, converting unsupported symbols to N.
  • --simple-reads option does not model errors and can handle all symbols.

Files

cerebis/sim3C-0.1.1.zip

Files (1.9 MB)

Name Size Download all
md5:eb46b1d8cf5a615e61d6b6b3070e43c7
1.9 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/cerebis/sim3C/tree/0.1.1 (URL)