GMOD/Apollo-2.0.8-RC1.zip
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GMOD-Apollo-4da53bd
.coveralls.yml
71 Bytes
.github
CONTRIBUTING.md
21.6 kB
ISSUE_TEMPLATE.md
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PULL_REQUEST_TEMPLATE.md
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images
githubForkButton.png
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githubForkTarget.png
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githubPullRequest.png
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githubTestProgress.png
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githubTestStatus.png
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.gitignore
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.jshintrc
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.travis.yml
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ChangeLog.md
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LICENSE.md
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README.md
3.6 kB
apollo
8.2 kB
application.properties
144 Bytes
build.gradle
15.5 kB
build.xml
11.5 kB
client
apollo
css
add_sequence_alteration.css
592 Bytes
annotation_info_editor.css
2.2 kB
confirm_dialog.css
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custom_track_styles.css
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edit_comments.css
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edit_dbxrefs.css
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export.css
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flat.css
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genome.css
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get_history.css
898 Bytes
get_sequence.css
387 Bytes
information_editor_panel.css
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main.css
816 Bytes
maker.css
5.4 kB
maker_darkbackground.css
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maker_styles.css
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search_sequence.css
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webapollo_track_styles.css
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img
ApolloLogo_100x36.png
3.1 kB
exclamation_circle_orange.png
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loading.gif
673 Bytes
marker_rounded_red.png
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marker_squared_red.png
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minus-arrowhead.png
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plus-arrowhead.png
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small-minus-arrowhead.png
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small-plus-arrowhead.png
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user_icon_16px.png
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warning_exclamation.png
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warning_exclamation_small.png
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webapollo_favicon.ico
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js
BioFeatureUtils.js
2.1 kB
EUtils.js
2.0 kB
FeatureEdgeMatchManager.js
8.8 kB
FeatureSelectionManager.js
7.3 kB
FormatUtils.js
767 Bytes
InformationEditor.js
1.8 kB
JSONUtils.js
16.7 kB
Permission.js
109 Bytes
SequenceFeatureDialog.js
9.0 kB
SequenceOntologyUtils.js
13.0 kB
SequenceSearch.js
12.0 kB
Store
SeqFeature
ApolloGFF3.js
6.4 kB
PseudoNCList.js
630 Bytes
ScratchPad.js
2.1 kB
TrackConfigTransformer.js
1.9 kB
View
Dialog
Help.js
4.1 kB
Track
AnnotSequenceTrack.js
564 Bytes
AnnotTrack.js
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DraggableAlignments.js
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DraggableBLASTFeatures.js
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DraggableHTMLFeatures.js
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DraggableResultFeatures.js
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SequenceTrack.js
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WebApolloAlignments2.js
5.0 kB
WebApolloCanvasFeatures.js
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TrackList
Faceted.js
872 Bytes
Hierarchical.js
712 Bytes
WebApollo.profile.js
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main.js
30.8 kB
jslib
bbop
bbop.js
453.3 kB
golr.js
129.7 kB
jquery.js
9.5 kB
search_box.js
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jquery
jquery.js
248.2 kB
jqueryui
accordion.js
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autocomplete.js
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button.js
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core.js
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datepicker-af.js
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datepicker-ar-DZ.js
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datepicker-ar.js
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datepicker-az.js
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datepicker-bg.js
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datepicker-bs.js
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datepicker-ca.js
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datepicker-cs.js
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datepicker-cy-GB.js
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datepicker-da.js
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datepicker-de.js
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datepicker-el.js
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datepicker-en-AU.js
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datepicker-en-GB.js
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datepicker-en-NZ.js
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datepicker-eo.js
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datepicker-es.js
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datepicker-et.js
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datepicker-eu.js
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datepicker-fa.js
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datepicker-fi.js
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datepicker-fo.js
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datepicker-fr-CH.js
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datepicker-fr.js
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datepicker-gl.js
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datepicker-he.js
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datepicker-hi.js
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datepicker-hr.js
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datepicker-hu.js
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datepicker-hy.js
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datepicker-id.js
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datepicker-is.js
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datepicker-it.js
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datepicker-ja.js
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datepicker-kk.js
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datepicker-km.js
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datepicker-ko.js
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datepicker-lb.js
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datepicker-lt.js
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datepicker-lv.js
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datepicker-mk.js
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datepicker-ml.js
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datepicker-ms.js
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datepicker-nl-BE.js
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datepicker-nl.js
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datepicker-no.js
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datepicker-pl.js
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datepicker-pt-BR.js
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datepicker-pt.js
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datepicker-rm.js
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datepicker-ro.js
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datepicker-ru.js
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datepicker-sk.js
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datepicker-sl.js
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datepicker-sq.js
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datepicker-sr-SR.js
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datepicker-sr.js
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datepicker-sv.js
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datepicker-ta.js
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datepicker-th.js
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datepicker-tj.js
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datepicker-tr.js
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datepicker-uk.js
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datepicker-vi.js
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datepicker-zh-CN.js
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datepicker-zh-HK.js
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datepicker-zh-TW.js
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datepicker.js
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dialog.js
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draggable.js
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droppable.js
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effects
blind.js
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bounce.js
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clip.js
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core.js
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drop.js
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explode.js
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fade.js
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fold.js
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highlight.js
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pulsate.js
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scale.js
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shake.js
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slide.js
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transfer.js
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mouse.js
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position.js
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progressbar.js
2.4 kB
resizable.js
26.7 kB
selectable.js
7.0 kB
slider.js
17.6 kB
sortable.js
40.2 kB
tabs.js
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themes
base
images
ui-bg_flat_0_aaaaaa_40x100.png
180 Bytes
ui-bg_flat_75_ffffff_40x100.png
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ui-bg_glass_55_fbf9ee_1x400.png
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ui-bg_glass_65_ffffff_1x400.png
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ui-bg_glass_75_dadada_1x400.png
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ui-bg_glass_75_e6e6e6_1x400.png
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ui-bg_glass_95_fef1ec_1x400.png
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ui-bg_highlight-soft_75_cccccc_1x100.png
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ui-icons_222222_256x240.png
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ui-icons_2e83ff_256x240.png
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ui-icons_454545_256x240.png
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ui-icons_888888_256x240.png
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ui-icons_cd0a0a_256x240.png
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jquery.ui.accordion.css
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jquery.ui.all.css
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jquery.ui.autocomplete.css
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jquery.ui.base.css
661 Bytes
jquery.ui.button.css
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jquery.ui.core.css
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jquery.ui.datepicker.css
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jquery.ui.dialog.css
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jquery.ui.progressbar.css
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jquery.ui.resizable.css
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jquery.ui.selectable.css
325 Bytes
jquery.ui.slider.css
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jquery.ui.tabs.css
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jquery.ui.theme.css
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widget.js
7.0 kB
websocket
spring-websocket.js
93.5 kB
json
annot.json
2.9 kB
docs
Apollo2Build.md
5.2 kB
Architecture.md
12.4 kB
CannedElements.md
5.1 kB
ChadoExport.md
2.6 kB
Command_line.md
2.5 kB
Configure.md
18.7 kB
Contributing.md
21.6 kB
Data_loading.md
10.9 kB
Data_loading_via_web_services.md
6.3 kB
ExampleBuild.md
2.7 kB
Migration.md
4.4 kB
NCBI_checks
Additional_Checks.txt
1.9 kB
Common_Eukaryotic_Annotation_Errors_to_Avoid.docx
123.4 kB
Permissions.md
1.6 kB
PostgreSQLSetup.md
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Prerequisites.md
2.5 kB
Release.md
798 Bytes
Setup.md
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TestScript.md
13.7 kB
Testing_notes.md
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Troubleshooting.md
11.6 kB
Web_services.md
5.4 kB
_config.yml
26 Bytes
apollo-stress-tests
suite1
README.docx
340.6 kB
README.pdf
344.8 kB
apollo-stress.jmx
19.4 kB
testdata
cercap
operations.csv
2.1 kB
usernames.csv
17 Bytes
suite2
example-users-for-stress-test.csv
848 Bytes
jmeter-dev-blast-test-4.jmx
266.1 kB
jmeter-dev-stress-test-1.jmx
152.8 kB
jmeter-dev-stress-test-2.jmx
225.1 kB
jmeter-dev-stress-test-3.jmx
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jmeter-dev-stress-test-notes.md
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jmeter-dev-stress-test.jmx
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jmeter-stress-test-template.jmx
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jmeter-stress-test.pdf
1.3 MB
summary-rc2-2015-07-26.csv
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architecture2.png
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conf.py
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exts
markdowntransform.py
257 Bytes
markdowntransform.pyc
737 Bytes
images
1.png
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2.png
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3.png
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download.png
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download_small.png
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index.rst
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schemaupdates.graffle
data.plist
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image1.tiff
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image10.tiff
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image2.png
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image3.png
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image4.png
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image5.png
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image7.tiff
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image8.tiff
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image9.tiff
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schemaupdates.pdf
16.4 kB
undoredotranscript.graffle
3.0 kB
web_services
examples
groovy
Apollo1Operations.groovy
2.0 kB
Apollo2Operations.groovy
3.9 kB
SampleFeatures.groovy
19.7 kB
add_organism.groovy
2.6 kB
add_users.groovy
3.9 kB
alter_group_permissions.groovy
6.5 kB
alter_user_groups_and_permissions.groovy
9.6 kB
delete_annotations_from_organism.groovy
3.1 kB
export_annotations_to_chado.groovy
2.4 kB
get_fasta.groovy
3.6 kB
get_gff3.groovy
2.4 kB
get_new_features.groovy
3.5 kB
get_usersinwa1.groovy
1.4 kB
migrate_annotations1to2.groovy
4.5 kB
stress_suite.sh
2.7 kB
stress_test.groovy
4.6 kB
test_user_file.csv
157 Bytes
transfer_annotations2to2.groovy
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perl
test_add_feature.pl
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test_remove_features.pl
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shell
addAttribute.sh
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addComment.sh
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deleteFeature.sh
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doLogin.sh
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exportFeatures.sh
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findAllOrganisms.sh
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getFeatures.sh
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listStatus.sh
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loadGroups.sh
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loadUsers.sh
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sample_rest.sh
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setStatus.sh
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gradle
wrapper
gradle-wrapper.jar
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gradle-wrapper.properties
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gradlew
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gradlew.bat
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grails-app
assets
images
ApolloLogo-letter-2-small_0.png
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ApolloLogo_100x36.png
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apple-touch-icon-retina.png
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apple-touch-icon.png
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favicon.ico
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grails_logo.png
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skin
database_add.png
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database_delete.png
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database_edit.png
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database_save.png
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database_table.png
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exclamation.png
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house.png
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information.png
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shadow.jpg
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sorted_asc.gif
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sorted_desc.gif
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spinner.gif
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springsource.png
9.1 kB
webapollo_favicon.ico
1.1 kB
javascripts
WebServicesController.js
447 Bytes
annotator
app.js
1.2 kB
controllers
Annotator.js
417 Bytes
directives
Directive.js
32 Bytes
filters
filter1.js
30 Bytes
models
Feature.js
31 Bytes
partials
Form.html
0 Bytes
services
Service.js
30 Bytes
application.js
595 Bytes
oldlook.js
552 Bytes
selectTracks.js
1.4 kB
vendor
angular-1.3.17.min.js
126.4 kB
angular-route.js
32.5 kB
angular-strap.min.js
63.4 kB
angular-strap.tpl.min.js
8.0 kB
angular.min.js
147.7 kB
angular.min.js.map
281.3 kB
jquery-1.11.1.min.js
95.8 kB
jquery-ui-1.11.2.custom
external
jquery
jquery.js
273.2 kB
images
ui-bg_diagonals-thick_18_b81900_40x40.png
418 Bytes
ui-bg_diagonals-thick_20_666666_40x40.png
312 Bytes
ui-bg_flat_10_000000_40x100.png
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ui-bg_glass_100_f6f6f6_1x400.png
262 Bytes
ui-bg_glass_100_fdf5ce_1x400.png
348 Bytes
ui-bg_glass_65_ffffff_1x400.png
207 Bytes
ui-bg_gloss-wave_35_f6a828_500x100.png
5.8 kB
ui-bg_highlight-soft_100_eeeeee_1x100.png
278 Bytes
ui-bg_highlight-soft_75_ffe45c_1x100.png
328 Bytes
ui-icons_222222_256x240.png
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ui-icons_228ef1_256x240.png
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ui-icons_ef8c08_256x240.png
4.5 kB
ui-icons_ffd27a_256x240.png
4.5 kB
ui-icons_ffffff_256x240.png
6.3 kB
index.html
31.7 kB
jquery-ui.css
35.3 kB
jquery-ui.js
469.4 kB
jquery-ui.min.css
30.2 kB
jquery-ui.min.js
239.6 kB
jquery-ui.structure.css
18.0 kB
jquery-ui.structure.min.css
14.8 kB
jquery-ui.theme.css
17.4 kB
jquery-ui.theme.min.css
13.9 kB
jquery-ui-menubar
images
ui-bg_flat_0_aaaaaa_40x100.png
180 Bytes
ui-bg_flat_75_ffffff_40x100.png
178 Bytes
ui-bg_glass_55_fbf9ee_1x400.png
120 Bytes
ui-bg_glass_65_ffffff_1x400.png
105 Bytes
ui-bg_glass_75_dadada_1x400.png
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ui-bg_glass_75_e6e6e6_1x400.png
110 Bytes
ui-bg_glass_95_fef1ec_1x400.png
119 Bytes
ui-bg_highlight-soft_75_cccccc_1x100.png
101 Bytes
ui-icons_222222_256x240.png
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ui-icons_2e83ff_256x240.png
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ui-icons_454545_256x240.png
4.4 kB
ui-icons_888888_256x240.png
4.4 kB
ui-icons_cd0a0a_256x240.png
4.4 kB
jquery-1.8.2.js
266.9 kB
jquery.ui.accordion.css
810 Bytes
jquery.ui.all.css
294 Bytes
jquery.ui.autocomplete.css
436 Bytes
jquery.ui.base.css
811 Bytes
jquery.ui.button.css
2.6 kB
jquery.ui.button.js
11.6 kB
jquery.ui.core.css
1.3 kB
jquery.ui.core.js
8.9 kB
jquery.ui.datepicker.css
4.0 kB
jquery.ui.dialog.css
1.4 kB
jquery.ui.dialog.js
21.4 kB
jquery.ui.menu.css
1.3 kB
jquery.ui.menu.js
16.6 kB
jquery.ui.menubar.css
642 Bytes
jquery.ui.menubar.js
9.1 kB
jquery.ui.position.js
16.5 kB
jquery.ui.progressbar.css
378 Bytes
jquery.ui.resizable.css
1.2 kB
jquery.ui.selectable.css
326 Bytes
jquery.ui.slider.css
1.1 kB
jquery.ui.spinner.css
1.2 kB
jquery.ui.tabs.css
1.3 kB
jquery.ui.theme.css
18.1 kB
jquery.ui.tooltip.css
545 Bytes
jquery.ui.widget.js
14.5 kB
raf
index.js
1.3 kB
ui-bootstrap-0.11.0.min.js
47.1 kB
ui-bootstrap-custom-0.13.4-csp.css
189 Bytes
ui-bootstrap-custom-0.13.4.js
173.6 kB
ui-bootstrap-custom-0.13.4.min.js
69.5 kB
ui-bootstrap-custom-tpls-0.13.4.js
197.7 kB
ui-bootstrap-custom-tpls-0.13.4.min.js
89.6 kB
ui-layout.js
5.0 kB
ui-layout.min.js
2.7 kB
stylesheets
annotator.css
1.8 kB
application.css
1.1 kB
errors.css
1.7 kB
login.css
237 Bytes
main.css
12.9 kB
mobile.css
1.4 kB
oldlook.css
4.7 kB
search_sequence.css
1.1 kB
ui-bootstrap-custom-0.13.4-csp.css
189 Bytes
ui-layout.css
1.1 kB
web_api_stylesheet.css
635 Bytes
conf
AppNavigation.groovy
1.1 kB
BootStrap.groovy
1.9 kB
BuildConfig.groovy
7.1 kB
Config.groovy
17.3 kB
DataSource.groovy
4.6 kB
UrlMappings.groovy
5.9 kB
org
bbop
apollo
SecurityFilters.groovy
4.8 kB
spring
resources.groovy
47 Bytes
controllers
org
bbop
apollo
AbstractApolloController.groovy
1.7 kB
AnnotationEditorController.groovy
78.1 kB
AnnotatorController.groovy
22.3 kB
AuthController.groovy
3.3 kB
AvailableStatusController.groovy
13.3 kB
CannedCommentController.groovy
13.9 kB
CannedKeyController.groovy
13.1 kB
CannedValueController.groovy
13.4 kB
FeatureEventController.groovy
11.9 kB
FeatureTypeController.groovy
3.4 kB
GroupController.groovy
17.3 kB
HomeController.groovy
5.3 kB
IOServiceController.groovy
13.5 kB
JbrowseController.groovy
25.9 kB
LoginController.groovy
8.5 kB
NcbiProxyServiceController.groovy
1.7 kB
OrganismController.groovy
65.8 kB
ProxyController.groovy
4.3 kB
SequenceController.groovy
9.1 kB
TrackController.groovy
14.9 kB
UserController.groovy
26.1 kB
WebServicesController.groovy
192 Bytes
domain
org
bbop
apollo
Analysis.groovy
2.2 kB
AnalysisFeature.groovy
1.5 kB
AnalysisProperty.groovy
1.4 kB
AvailableStatus.groovy
252 Bytes
AvailableStatusOrganismFilter.groovy
199 Bytes
BiologicalRegion.groovy
239 Bytes
CDS.groovy
279 Bytes
CV.groovy
175 Bytes
CVTerm.groovy
2.2 kB
CVTermPath.groovy
1.9 kB
CVTermRelationship.groovy
1.6 kB
CannedComment.groovy
255 Bytes
CannedCommentOrganismFilter.groovy
191 Bytes
CannedKey.groovy
243 Bytes
CannedKeyOrganismFilter.groovy
175 Bytes
CannedValue.groovy
245 Bytes
CannedValueOrganismFilter.groovy
183 Bytes
Chromosome.groovy
251 Bytes
Comment.groovy
225 Bytes
Contig.groovy
288 Bytes
CustomDomainMapping.groovy
315 Bytes
CustomFeature.groovy
1.3 kB
CustomTranscript.groovy
1.4 kB
DB.groovy
1.1 kB
DBXref.groovy
2.6 kB
DBXrefProperty.groovy
1.3 kB
DataAdapter.groovy
873 Bytes
Deletion.groovy
364 Bytes
Environment.groovy
1.1 kB
EnvironmentCVTerm.groovy
1.2 kB
Exon.groovy
283 Bytes
Feature.groovy
5.4 kB
FeatureAttribute.groovy
253 Bytes
FeatureCVTerm.groovy
2.0 kB
FeatureEvent.groovy
1.7 kB
FeatureGenotype.groovy
2.2 kB
FeatureLazyResidues.groovy
235 Bytes
FeatureLocation.groovy
2.5 kB
FeatureProperty.groovy
1.5 kB
FeatureRelationship.groovy
1.7 kB
FeatureSynonym.groovy
1.7 kB
FeatureType.groovy
155 Bytes
Frameshift.groovy
798 Bytes
Gene.groovy
323 Bytes
GeneMemberRegion.groovy
237 Bytes
Genotype.groovy
1.4 kB
GroupOrganismPermission.groovy
256 Bytes
GroupPermission.groovy
155 Bytes
GroupTrackPermission.groovy
219 Bytes
Insertion.groovy
324 Bytes
Intron.groovy
298 Bytes
MRNA.groovy
215 Bytes
Match.groovy
2.0 kB
MiRNA.groovy
213 Bytes
Minus1Frameshift.groovy
435 Bytes
Minus2Frameshift.groovy
435 Bytes
NcRNA.groovy
218 Bytes
NonCanonicalFivePrimeSpliceSite.groovy
305 Bytes
NonCanonicalThreePrimeSpliceSite.groovy
307 Bytes
Operation.groovy
735 Bytes
Organism.groovy
1.5 kB
OrganismDBXref.groovy
1.2 kB
OrganismFilter.groovy
149 Bytes
OrganismProperty.groovy
1.6 kB
PartOf.groovy
176 Bytes
Permission.groovy
191 Bytes
Phenotype.groovy
1.5 kB
PhenotypeDescription.groovy
2.0 kB
PhenotypeStatement.groovy
2.2 kB
Plus1Frameshift.groovy
432 Bytes
Plus2Frameshift.groovy
432 Bytes
Preference.groovy
511 Bytes
Proxy.groovy
522 Bytes
Pseudogene.groovy
326 Bytes
Publication.groovy
2.4 kB
PublicationAuthor.groovy
1.3 kB
PublicationDBXref.groovy
1.3 kB
PublicationRelationship.groovy
1.7 kB
RRNA.groovy
210 Bytes
Region.groovy
363 Bytes
RepeatRegion.groovy
271 Bytes
Role.groovy
270 Bytes
SearchTool.groovy
305 Bytes
Sequence.groovy
779 Bytes
SequenceAlteration.groovy
460 Bytes
SequenceAttribute.groovy
276 Bytes
SequenceChunk.groovy
237 Bytes
SequenceFeature.groovy
266 Bytes
ServerData.groovy
352 Bytes
SnRNA.groovy
219 Bytes
SnoRNA.groovy
216 Bytes
SpliceSite.groovy
193 Bytes
Status.groovy
257 Bytes
StopCodonReadThrough.groovy
525 Bytes
Substitution.groovy
250 Bytes
SuperContig.groovy
206 Bytes
Synonym.groovy
1.1 kB
TRNA.groovy
211 Bytes
TrackCache.groovy
731 Bytes
Transcript.groovy
338 Bytes
TranscriptAttribute.groovy
255 Bytes
TranscriptRegion.groovy
203 Bytes
TransposableElement.groovy
270 Bytes
User.groovy
2.0 kB
UserGroup.groovy
182 Bytes
UserOrganismPermission.groovy
674 Bytes
UserOrganismPreference.groovy
1.1 kB
UserPermission.groovy
162 Bytes
UserPreference.groovy
146 Bytes
UserTrackPermission.groovy
217 Bytes
gmod
chado
Chadoprop.groovy
551 Bytes
Cv.groovy
434 Bytes
Cvprop.groovy
570 Bytes
Cvterm.groovy
7.2 kB
CvtermDbxref.groovy
294 Bytes
CvtermRelationship.groovy
287 Bytes
Cvtermpath.groovy
496 Bytes
Cvtermprop.groovy
419 Bytes
Cvtermsynonym.groovy
409 Bytes
Db.groovy
438 Bytes
Dbxref.groovy
1.5 kB
Dbxrefprop.groovy
409 Bytes
Eimage.groovy
398 Bytes
Environment.groovy
1.1 kB
EnvironmentCvterm.groovy
291 Bytes
Expression.groovy
697 Bytes
ExpressionCvterm.groovy
392 Bytes
ExpressionCvtermprop.groovy
510 Bytes
ExpressionImage.groovy
284 Bytes
ExpressionPub.groovy
271 Bytes
Expressionprop.groovy
466 Bytes
Feature.groovy
3.7 kB
FeatureContains.groovy
1.0 kB
FeatureCvterm.groovy
652 Bytes
FeatureCvtermDbxref.groovy
302 Bytes
FeatureCvtermPub.groovy
287 Bytes
FeatureCvtermprop.groovy
489 Bytes
FeatureDbxref.groovy
293 Bytes
FeatureExpression.groovy
377 Bytes
FeatureExpressionprop.groovy
517 Bytes
FeatureGenotype.groovy
566 Bytes
FeatureIntersection.groovy
1.8 kB
FeaturePhenotype.groovy
286 Bytes
FeaturePub.groovy
311 Bytes
FeaturePubprop.groovy
468 Bytes
FeatureRelationship.groovy
649 Bytes
FeatureRelationshipPub.groovy
317 Bytes
FeatureRelationshipprop.groovy
610 Bytes
FeatureRelationshippropPub.groovy
337 Bytes
FeatureSynonym.groovy
338 Bytes
Featureloc.groovy
769 Bytes
FeaturelocPub.groovy
271 Bytes
Featuremap.groovy
542 Bytes
FeaturemapPub.groovy
271 Bytes
Featurepos.groovy
376 Bytes
Featureprop.groovy
500 Bytes
FeaturepropPub.groovy
276 Bytes
Featurerange.groovy
523 Bytes
FeaturesetMeets.groovy
1.0 kB
Genotype.groovy
1.3 kB
Genotypeprop.groovy
572 Bytes
Organism.groovy
1.0 kB
OrganismDbxref.groovy
276 Bytes
OrganismFeatureCount.groovy
1.8 kB
Organismprop.groovy
452 Bytes
Phendesc.groovy
342 Bytes
Phenotype.groovy
1.4 kB
PhenotypeComparison.groovy
542 Bytes
PhenotypeComparisonCvterm.groovy
366 Bytes
PhenotypeCvterm.groovy
424 Bytes
Phenstatement.groovy
364 Bytes
Phylonode.groovy
1.5 kB
PhylonodeDbxref.groovy
281 Bytes
PhylonodeOrganism.groovy
291 Bytes
PhylonodePub.groovy
266 Bytes
PhylonodeRelationship.groovy
424 Bytes
Phylonodeprop.groovy
448 Bytes
Phylotree.groovy
647 Bytes
PhylotreePub.groovy
266 Bytes
Pub.groovy
3.1 kB
PubDbxref.groovy
273 Bytes
PubRelationship.groovy
282 Bytes
Pubauthor.groovy
561 Bytes
Pubprop.groovy
420 Bytes
Synonym.groovy
523 Bytes
i18n
messages.properties
3.3 kB
messages_cs_CZ.properties
3.4 kB
messages_da.properties
3.4 kB
messages_de.properties
3.7 kB
messages_es.properties
3.5 kB
messages_fr.properties
2.0 kB
messages_it.properties
3.5 kB
messages_ja.properties
3.9 kB
messages_nb.properties
3.3 kB
messages_nl.properties
3.4 kB
messages_pl.properties
3.7 kB
messages_pt_BR.properties
3.5 kB
messages_pt_PT.properties
2.7 kB
messages_ru.properties
3.8 kB
messages_sv.properties
3.5 kB
messages_th.properties
6.2 kB
messages_zh_CN.properties
2.2 kB
shiro.properties
48 Bytes
jobs
org
bbop
apollo
CleanupPreferencesJob.groovy
555 Bytes
PhoneHomeJob.groovy
493 Bytes
migrations
changelog-2_0_0.groovy
86.7 kB
changelog-2_0_1.groovy
5.6 kB
changelog-2_0_2.groovy
411 Bytes
changelog-2_0_3.groovy
911 Bytes
changelog-2_0_7.groovy
133 Bytes
changelog.groovy
196 Bytes
realms
org
bbop
apollo
DbRealm.groovy
4.4 kB
services
org
bbop
apollo
AnnotationEditorService.groovy
717 Bytes
AnnotatorService.groovy
4.8 kB
CdsService.groovy
6.5 kB
ChadoHandlerService.groovy
61.0 kB
ConfigWrapperService.groovy
3.7 kB
ConfigurableFeatureService.groovy
2.1 kB
CvTermService.groovy
1.8 kB
DomainMarshallerService.groovy
3.1 kB
ExonService.groovy
20.5 kB
FastaHandlerService.groovy
10.6 kB
FeatureEventService.groovy
38.9 kB
FeaturePropertyService.groovy
3.6 kB
FeatureRelationshipService.groovy
7.5 kB
FeatureService.groovy
150.1 kB
FeatureTypeService.groovy
1.4 kB
FileService.groovy
8.1 kB
Gff3HandlerService.groovy
19.8 kB
JbrowseService.groovy
1.1 kB
NameService.groovy
6.0 kB
NonCanonicalSplitSiteService.groovy
14.8 kB
OrganismService.groovy
3.3 kB
OverlapperService.groovy
7.8 kB
PermissionService.groovy
26.7 kB
PhoneHomeService.groovy
2.3 kB
PreferenceService.groovy
36.8 kB
ProjectionService.groovy
1.1 kB
ProxyService.groovy
2.0 kB
ReportService.groovy
12.3 kB
RequestHandlingService.groovy
115.2 kB
SequenceSearchService.groovy
2.6 kB
SequenceService.groovy
22.9 kB
SvgService.groovy
7.2 kB
TrackMapperService.groovy
3.0 kB
TrackService.groovy
21.6 kB
TranscriptService.groovy
20.6 kB
UserService.groovy
4.5 kB
authenticator
AuthenticatorService.groovy
428 Bytes
RemoteUserAuthenticatorService.groovy
4.6 kB
UsernamePasswordAuthenticatorService.groovy
1.1 kB
taglib
org
bbop
apollo
PermissionTagLib.groovy
726 Bytes
views
annotator
adminPanel.gsp
325 Bytes
componentDiv.gsp
1.3 kB
demo.gsp
1.2 kB
detail.gsp
6.6 kB
index.gsp
1.8 kB
notAuthorized.gsp
411 Bytes
report.gsp
5.0 kB
splitter.gsp
1.4 kB
version.gsp
1.5 kB
workingDiv.gsp
1.4 kB
auth
login.gsp
2.9 kB
unauthorized.gsp
402 Bytes
availableStatus
_form.gsp
1.3 kB
create.gsp
1.7 kB
edit.gsp
1.9 kB
index.gsp
2.2 kB
show.gsp
4.1 kB
cannedComment
_form.gsp
1.6 kB
create.gsp
1.7 kB
edit.gsp
1.9 kB
index.gsp
2.5 kB
show.gsp
4.6 kB
cannedKey
_form.gsp
1.6 kB
create.gsp
1.6 kB
edit.gsp
1.9 kB
index.gsp
2.3 kB
show.gsp
5.2 kB
cannedValue
_form.gsp
1.5 kB
create.gsp
1.6 kB
edit.gsp
1.9 kB
index.gsp
2.7 kB
show.gsp
4.4 kB
error.gsp
445 Bytes
featureEvent
_form.gsp
4.2 kB
create.gsp
1.6 kB
edit.gsp
1.9 kB
index.gsp
2.8 kB
report.gsp
7.2 kB
show.gsp
7.5 kB
featureType
_form.gsp
1.4 kB
create.gsp
1.6 kB
edit.gsp
1.9 kB
index.gsp
2.3 kB
show.gsp
3.9 kB
google_analytics.gsp
820 Bytes
home
metrics.gsp
2.4 kB
systemInfo.gsp
2.1 kB
index.gsp
3.3 kB
jbrowse
chooseOrganismForJbrowse.gsp
934 Bytes
layouts
_reportHeader.gsp
2.1 kB
annotator.gsp
2.7 kB
annotator2.gsp
2.6 kB
embedded.gsp
2.8 kB
login.gsp
3.7 kB
main.gsp
2.8 kB
oldlook.gsp
2.7 kB
report.gsp
2.7 kB
login
doLogin.gsp
3.6 kB
menu.gsp
1.4 kB
organism
_summaryEntry.gsp
2.2 kB
report.gsp
1.5 kB
proxy
_form.gsp
1.3 kB
create.gsp
1.6 kB
edit.gsp
1.8 kB
index.gsp
2.6 kB
show.gsp
3.8 kB
sequence
index.gsp
9.3 kB
permissions.gsp
1.8 kB
report.gsp
4.4 kB
singleUser.gsp
3.5 kB
websocketTest.gsp
3.1 kB
webServices
index.gsp
8.4 kB
web_services.gsp
50.0 kB
grailsw
9.6 kB
grailsw.bat
6.0 kB
gwt-sdk
gwt-dev.jar
38.5 MB
gwt-user.jar
32.0 MB
validation-api-1.0.0.GA-sources.jar
65.2 kB
validation-api-1.0.0.GA.jar
47.4 kB
index.html
419 Bytes
install_jbrowse.sh
1.4 kB
lib
gbol
resources
1.0
resources-1.0.jar
900 Bytes
gwt
gwt-servlet-deps.jar
276.6 kB
gwt-servlet.jar
9.4 MB
gwtbootstrap3-0.9.4.jar
1.6 MB
gwtbootstrap3-extras-0.9.4.jar
1.2 MB
package.json
919 Bytes
sample-docker-apollo-config.groovy
54 Bytes
sample-h2-apollo-config.groovy
3.9 kB
sample-mysql-apollo-config.groovy
3.9 kB
sample-postgres-apollo-config.groovy
6.3 kB
scripts
_Events.groovy
7.5 kB
chado-schema-with-ontologies.sql.gz
5.4 MB
clean_organism.sh
1.8 kB
copy_client.sh
272 Bytes
delete_all_features.sh
471 Bytes
delete_only_features.sh
429 Bytes
load_chado_schema.sh
4.4 kB
load_users.sh
163 Bytes
print_all_features.sh
690 Bytes
version-template.jsp
110 Bytes
settings.gradle
657 Bytes
src
groovy
org
bbop
apollo
ConfigurableFeature.groovy
587 Bytes
CvTermStringEnum.groovy
297 Bytes
DefaultPaddingStrategy.groovy
192 Bytes
FeaturePositionComparator.groovy
1.6 kB
FlankingRegion.groovy
254 Bytes
FormatUtil.groovy
2.9 kB
GFF3Entry.groovy
2.9 kB
LeftPaddingStrategy.groovy
329 Bytes
LetterPaddingStrategy.groovy
302 Bytes
Ontological.groovy
199 Bytes
PaddingStrategy.groovy
126 Bytes
PhoneHomeEnum.groovy
480 Bytes
TermTypeEnum.groovy
191 Bytes
alteration
SequenceAlterationInContext.groovy
293 Bytes
event
AnnotationEvent.groovy
678 Bytes
AnnotationEventListener.groovy
162 Bytes
AnnotationListener.groovy
188 Bytes
filter
Cds3Filter.groovy
753 Bytes
FeatureFilter.groovy
213 Bytes
StopCodonFilter.groovy
584 Bytes
history
FeatureEventView.groovy
297 Bytes
FeatureOperation.groovy
670 Bytes
operation
OperationEnum.groovy
1.2 kB
preference
OrganismDTO.groovy
114 Bytes
SequenceDTO.groovy
157 Bytes
UserDTO.groovy
87 Bytes
UserOrganismPreferenceDTO.groovy
1.2 kB
projection
AbstractProjection.groovy
656 Bytes
Coordinate.groovy
713 Bytes
DiscontinuousProjection.groovy
3.8 kB
DiscontinuousProjectionFactory.groovy
912 Bytes
DuplicateTrackProjection.groovy
312 Bytes
Projection.groovy
401 Bytes
RefSeqProjector.groovy
285 Bytes
ReferenceTrack.groovy
194 Bytes
ReverseProjection.groovy
533 Bytes
Track.groovy
1.1 kB
TrackProjector.groovy
183 Bytes
report
AnnotatorSummary.groovy
376 Bytes
OrganismPermissionSummary.groovy
262 Bytes
OrganismSummary.groovy
1.0 kB
PerformanceMetric.groovy
237 Bytes
SequenceSummary.groovy
290 Bytes
sequence
DownloadFile.groovy
153 Bytes
Overlapper.groovy
304 Bytes
Range.groovy
526 Bytes
SequenceDTO.groovy
176 Bytes
SequenceLocationDTO.groovy
543 Bytes
SequenceTranslationHandler.groovy
8.9 kB
StandardTranslationTable.groovy
3.1 kB
Strand.groovy
608 Bytes
TranslationTable.groovy
2.7 kB
search
Alignment.java
141 Bytes
AlignmentParsingException.java
244 Bytes