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GMOD/Apollo: Apollo2.0.8-RC1(JB#d3827c)

Nathan Dunn; Colin Diesh; Deepak; S2KFan; GreggHelt2; Robert Buels; Monica Munoz-Torres; Eric Rasche; Stephen Ficklin; Justin Reese; Anthony Bretaudeau; hsiao yi; NehaVC; luke; Jun-Wei Lin; Eric Y; childers; The Gitter Badger; Kim Rutherford; Aymeric Naômé


DataCite XML Export

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  <identifier identifierType="DOI">10.5281/zenodo.1028884</identifier>
  <creators>
    <creator>
      <creatorName>Nathan Dunn</creatorName>
      <affiliation>Lawrence Berkeley National Lab</affiliation>
    </creator>
    <creator>
      <creatorName>Colin Diesh</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Deepak</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>S2KFan</creatorName>
      <affiliation></affiliation>
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    <creator>
      <creatorName>GreggHelt2</creatorName>
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    <creator>
      <creatorName>Robert Buels</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Monica Munoz-Torres</creatorName>
      <affiliation>Lawrence Berkeley National Laboratory</affiliation>
    </creator>
    <creator>
      <creatorName>Eric Rasche</creatorName>
      <affiliation>@BackofenLab</affiliation>
    </creator>
    <creator>
      <creatorName>Stephen Ficklin</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Justin Reese</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Anthony Bretaudeau</creatorName>
      <affiliation>BIPAA/GenOuest</affiliation>
    </creator>
    <creator>
      <creatorName>hsiao yi</creatorName>
      <affiliation>National Taiwan University-Graduate Institute of Biomedical Electronics and Bioinformatics</affiliation>
    </creator>
    <creator>
      <creatorName>NehaVC</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>luke</creatorName>
      <affiliation>OHSU Computational Biology Department</affiliation>
    </creator>
    <creator>
      <creatorName>Jun-Wei Lin</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>Eric Y</creatorName>
      <affiliation>UC Berkeley</affiliation>
    </creator>
    <creator>
      <creatorName>childers</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>The Gitter Badger</creatorName>
      <affiliation>Gitter</affiliation>
    </creator>
    <creator>
      <creatorName>Kim Rutherford</creatorName>
      <affiliation>Uni of Cambridge / PomBase</affiliation>
    </creator>
    <creator>
      <creatorName>Aymeric Naômé</creatorName>
      <affiliation></affiliation>
    </creator>
  </creators>
  <titles>
    <title>GMOD/Apollo: Apollo2.0.8-RC1(JB#d3827c)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <dates>
    <date dateType="Issued">2017-10-19</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/1028884</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/GMOD/Apollo/tree/2.0.8-RC1</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.598056</relatedIdentifier>
  </relatedIdentifiers>
  <version>2.0.8-RC1</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;&lt;strong&gt;Release Candidate 1&lt;/strong&gt;&lt;/p&gt;
&lt;p&gt;Apollo 2.0.8-RC1&lt;/p&gt;
&lt;p&gt;Some of the new features include:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;added ability to annotate canvas BAM tracks&lt;/li&gt;
&lt;li&gt;expanded track services&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;Some important bug fixes:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;numerous fixes to track web services&lt;/li&gt;
&lt;li&gt;fixed numerous build issues&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;em&gt;Note&lt;/em&gt; You will need to &lt;a href="https://nodejs.org/en/download/package-manager/"&gt;install node 6 or better&lt;/a&gt;.&lt;br&gt;
&lt;em&gt;Note&lt;/em&gt; If updating your jbrowse settings from previous versions in &lt;code&gt;apollo-config.groovy&lt;/code&gt; you will need to set the JBrowse to use the &lt;a href="https://github.com/GMOD/Apollo/blob/2.0.7/sample-postgres-apollo-config.groovy#L113"&gt;currently tagged version or better&lt;/a&gt;.   If this is  commented out, however, &lt;a href="https://github.com/GMOD/Apollo/blob/2.0.7/grails-app/conf/Config.groovy#L388-L433"&gt;the default will work&lt;/a&gt;.&lt;/p&gt;
&lt;p&gt;The complete change log can be found at: &lt;a href="https://github.com/GMOD/Apollo/blob/master/ChangeLog.md"&gt;https://github.com/GMOD/Apollo/blob/master/ChangeLog.md&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;Please review the documentation pages for more details: &lt;a href="http://genomearchitect.readthedocs.io/en/stable/"&gt;http://genomearchitect.readthedocs.io/en/stable/&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;Note: You can find a guide upgrading existing Apollo installations here: 
&lt;a href="http://genomearchitect.readthedocs.io/en/stable/Migration.html"&gt;http://genomearchitect.readthedocs.io/en/stable/Migration.html&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;Please open a GitHub issue if you find any problems: &lt;a href="https://github.com/GMOD/Apollo/issues/"&gt;https://github.com/GMOD/Apollo/issues/&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;Active mailing list (apollo@lists.lbl.gov) and &lt;a href="http://gmod.827538.n3.nabble.com/Apollo-f815553.html"&gt;archive&lt;/a&gt;.&lt;/p&gt;</description>
  </descriptions>
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