AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

This will be the last release supporting Python 3.9. Future releases will require Python 3.10.

Fixes

• Fix cmake error cannot create directory: /cmake/Amici during model import in cases where BLAS was not found via FindBLAS by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2389
• Added status code AMICI_CONSTR_FAIL by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2379
• Fixed certain initial state issues with PEtab by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2382
• Fixed Solver operator== and copyctor (constraints were not copied correctly) by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2388
• Avoid confusing warnings about non-finite timepoints by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2395
• Fixed incorrect exception types / messages for IDASolver by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2398
• cmake: set SUNDIALS path hint for python package to help CMake find the correct SUNDIALS installation by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2397

Features

• Optionally include measurements in plot_observable_trajectories by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2381
• Improved type annotations in swig-wrappers by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2401
• Additional attributes are accessible directly via ReturnDataView and ExpDataView, e.g. ReturnDataView.ny, ReturnDataView.nx by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2405
• Allow subselection of state variables for convergence check during steady-state simulations via Model.set_steadystate_mask([1, 0, ..., 1]) (positive value: check; non-positive: don't check). by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2387

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.23.1...v0.24.0