CDCgov/Rnssp: Rnssp 0.1.0

New Features

• New function get_api_response() added as a wrapper to the $get_api_response() method defined in the Credentials class.
• New function get_api_data() added as a wrapper to the $get_api_data() method defined in the Credentials class.
• New function get_api_tsgraph() added as a wrapper to the $get_api_tsgraph() method defined in the Credentials class.
• Regression/EWMA Switch algorithm alert_switch() added for anomaly detection.
• Adaptive Multiple Regression algorithm alert_regression() added for anomaly detection.
• Farrington Temporal Detector algorithm alert_farrington() added for weekly time series of counts spanning multiple years.
• ICD Code Web Scraper function webscrape_icd() added to web scrape ICD discharge diagnosis code sets from the CDC FTP server (for ICD-10) or CMS website (for ICD-9).
• The following Addins have been added for RStudio users:
  • Create User Profile via a Graphical User Interface (Rnssp:::create_user_profile_gui())
  • Create a User Profile with a script skeleton (Rnssp:::create_user_profile())
  • List available Rnssp templates (list_templates())
  • Add or Update Rnssp templates (Rnssp:::add_rmd_template_gui())
  • Remove Rnssp templates (Rnssp:::remove_rmd_template_gui())
  • Open Rnssp templates online documentation (Rnssp:::rnssp_templates_manual())
  • Open Rnssp package online documentation (Rnssp:::rnssp_manual())

Updates

• add_rmd_template() no longer has a template_name argument. The argument template_name has been replaced by template which is the first argument in the function call.
• New test test-alert_farrington.R added for alert_farrington().
• New test test-alert_regression.R added for alert_regression().
• New test test-alert_switch.R added for alert_switch().
• New test test-add_rmd_template.R added for add_rmd_template().
• New test test-remove_rmd_template.R added for remove_rmd_template().
• New test test-get_api_data.R added for the get_api_data() function.
• New test test-get_api_response.R added for the get_api_response() function.
• New test test-get_api_tsgraph.R added for the get_api_tsgraph() function.
• New test test-get_api_data_method.R added for the $get_api_data() method.
• New test test-get_api_response_method.R added for the $get_api_response() method.
• New test test-get_api_tsgraph_method.R added for the $get_api_tsgraph() method.
• New test test-webscrape_icd.R added for webscrape_icd()
• Added shapefile for US Hospital Service Area (HSA) Shapefile (hsa_sf)
• Added Rnssp stopwords (rnssp_stopwords)
• alert_mar() is depecrated. Use alert_regression instead.
• Test test_alert_mar.R has been removed for alert_mar().
• Regression models in alert_regression() are fit using lm.fit() instead of lm() to reduce computation time associated with extraneous computations made by lm().
• New vignette added to demonstrate the use of Rnssp addins.

Other News

• slider package dependency no longer needed.
• cli package is now a dependency for attractive Command Line Interfaces (CLIs)