Published July 11, 2019
| Version v0.7.0
Software
Open
jmenglund/predsim: v0.7.0
Description
predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy.
The code has been tested with Python 3.3 and 3.6.
Source repository: https://github.com/jmenglund/predsim
This is a minor release with added ability to manually set base frequencies.
Files
jmenglund/predsim-v0.7.0.zip
Files
(21.8 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/jmenglund/predsim/tree/v0.7.0 (URL)