Published July 11, 2019 | Version v0.7.0
Software Open

jmenglund/predsim: v0.7.0

  • 1. Swedish Museum of Natural History

Description

predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy.

The code has been tested with Python 3.3 and 3.6.

Source repository: https://github.com/jmenglund/predsim

This is a minor release with added ability to manually set base frequencies.

Files

jmenglund/predsim-v0.7.0.zip

Files (21.8 kB)

Name Size Download all
md5:5ca716f4f1f476299a8e69ea02848066
21.8 kB Preview Download

Additional details

Related works