Published April 13, 2020 | Version v0.0.1
Software Open

yiluheihei/microbiomeMarker: microbiomeMarker 0.0.1

Creators

Description

  • main data structure: S4 object microbiomeMarker inheited from phyloseq in package phyloseq, used for storing microbiome marker data.
  • LEfSe (Linear discriminant analysis effect size) analysis: lefse().
  • visualization for lefse results: lefse_barplot(), lefse_cladogram().

Files

yiluheihei/microbiomeMarker-v0.0.1.zip

Files (1.6 MB)

Name Size Download all
md5:32be9e2688b7cf396bfee8c50706c650
1.6 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/yiluheihei/microbiomeMarker/tree/v0.0.1 (URL)