mikemc/metacal: metacal 0.2.0
Description
New features New estimation and calibration functions
estimate_bias()
and calibrate()
provide easy-to-use high-level interfaces to the original metacal bias-estimation and calibration method. Their use is illustrated in the new tutorial.
pairwise_ratios()
allows computing ratios between pairs of taxa and/or samples.perturb()
applies a compositional perturbation to all observations in an abundance matrix (or phyloseq object).
The new functions estimate_bias()
, perturb()
, calibrate()
, and pairwise_ratios()
all work with objects from the phyloseq package as well as plain matrices. Phyloseq is now a required dependency, though may be made optional in the future.
The new tutorial demonstrates the new estimation and calibration functions on a new dataset from Leopold and Busby (2020).
Minor fixes- Fixed failure of
coocurrence_matrix()
when names were missing (#5).
Files
mikemc/metacal-v0.2.0.zip
Files
(690.6 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/mikemc/metacal/tree/v0.2.0 (URL)