Published April 7, 2024 | Version v1.6.0
Software Open

navis-org/navis: Version 1.6.0

  • 1. University of Cambridge
  • 2. AdInMo
  • 3. University of Cambridge & MRC LMB
  • 4. Charité Universitätsmedizin Berlin
  • 5. VirtualFlyBrain.org
  • 6. Janelia
  • 7. Allen Institute
  • 8. VIB-KU Leuven

Description

It has been a long time (7 months, to be precise) since the last release but we've not been idle!

Version 1.6.0 is chock-full with new features, improvements and fixes. Here are some of the highlights:

Breaking

  • with this release we've dropped support for Python 3.8 as per NEP 29
  • navis.write_swc no longer writes Dotprops

New Features

  • navis.read_parquet and navis.write_parquet let you read/write large set of skeletons or dotprops; note: these are experimental and the format specs might still change but feel free to take it for a spin
  • new navis.NeuronConnector class for creating connectivity graphs from groups of neurons with consistent connector IDs (e.g. from pymaid neurons)

Improvements

  • improved logic for splitting NBLASTs across multiple cores
  • i/o functions can now read directly from .tar or .tar.gz files (.zip was already supported)

Fixes

  • fixes to the neuPrint interface by @stuarteberg
  • plotting empty TreeNeurons no longer breaks things thanks to @floesche
  • reading large files (i.e. mostly meshes) directly from a URL should not break anymore

New Contributors

  • @stuarteberg made their first contribution in https://github.com/navis-org/navis/pull/124
  • @floesche made their first contribution in https://github.com/navis-org/navis/pull/125

Full Changelog: https://navis.readthedocs.io/en/latest/source/whats_new.html Commit history: https://github.com/navis-org/navis/compare/v1.5.0...v1.6.0

Files

navis-org/navis-v1.1.0.zip

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Additional details

Related works

Is supplement to
Software: https://github.com/navis-org/navis/tree/v1.6.0 (URL)