Number_of_reads_in_clusters	113514					
Number_of_clusters	17612					
Number_of_superclusters	17544					
Number_of_singlets	173366					
Number_of_analyzed_reads	286880					
						
Cluster	Supercluster	Size	Size_adjusted	Automatic_annotation	TAREAN_annotation	Final_annotation
1	6	2675	2675	All	Other	All
2	5	1723	1723	All	Other	All
3	3	1160	1160	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Putative satellites (low confidence)	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
4	10	942	942	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
5	3	870	870	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
6	3	806	806	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
7	11	777	777	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
8	7	750	750	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
9	1	744	744	All/organelle/plastid	Other	All/organelle/plastid
10	14	744	744	All	Putative satellites (low confidence)	All
11	2	715	715	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
12	5	690	690	All	Other	All
13	4	682	682	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
14	16	680	680	All	Other	All
15	17	679	679	All	Other	All
16	1	671	671	All/organelle/plastid	Other	All/organelle/plastid
17	1	652	652	All/organelle/plastid	Other	All/organelle/plastid
18	18	645	645	All	Other	All
19	13	620	620	All	Other	All
20	9	617	617	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
21	19	615	615	All	Other	All
22	2	612	612	All/repeat/rDNA/45S_rDNA	Putative satellites (low confidence)	All/repeat/rDNA/45S_rDNA
23	8	605	605	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
24	20	603	603	All	Other	All
25	4	600	600	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
26	1	598	598	All/organelle/plastid	Other	All/organelle/plastid
27	15	583	583	All	Other	All
28	1	574	574	All/organelle/plastid	Other	All/organelle/plastid
29	22	553	553	All	Other	All
30	2	553	553	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
31	1	552	552	All/organelle/plastid	Other	All/organelle/plastid
32	1	549	549	All/organelle/plastid	Other	All/organelle/plastid
33	1	537	537	All/organelle/plastid	Other	All/organelle/plastid
34	4	529	529	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
35	7	524	524	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
36	24	513	513	All	Other	All
37	26	499	499	All	Other	All
38	9	495	495	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
39	12	481	481	All	Other	All
40	7	466	466	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
41	2	457	457	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
42	2	453	453	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
43	12	451	451	All	Other	All
44	7	451	451	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
45	2	442	442	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
46	29	441	441	All	Other	All
47	30	440	440	All	Other	All
48	1	439	439	All/organelle/plastid	Other	All/organelle/plastid
49	4	433	433	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
50	5	425	425	All	Other	All
51	9	423	423	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
52	1	412	412	All/organelle/plastid	Other	All/organelle/plastid
53	21	403	403	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
54	1	398	398	All/organelle/plastid	Other	All/organelle/plastid
55	31	396	396	All	Other	All
56	4	396	396	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
57	1	389	389	All/organelle/plastid	Other	All/organelle/plastid
58	32	385	385	All/organelle/plastid	Other	All/organelle/plastid
59	8	385	385	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
60	1	384	384	All/organelle/plastid	Other	All/organelle/plastid
61	33	381	381	All/organelle/plastid	Other	All/organelle/plastid
62	10	379	379	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
63	34	375	375	All	Other	All
64	23	374	374	All	Other	All
65	1	374	374	All/organelle/plastid	Other	All/organelle/plastid
66	28	369	369	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
67	35	369	369	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
68	1	359	359	All/organelle/plastid	Other	All/organelle/plastid
69	27	346	346	All	Other	All
70	4	345	345	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
71	37	338	338	All/organelle/plastid	Other	All/organelle/plastid
72	2	337	337	All/repeat/rDNA/45S_rDNA	Putative satellites (low confidence)	All/repeat/rDNA/45S_rDNA
73	4	332	332	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
74	38	328	328	All/organelle/plastid	Other	All/organelle/plastid
75	10	327	327	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
76	2	320	320	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
77	1	318	318	All/organelle/plastid	Other	All/organelle/plastid
78	39	316	316	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
79	25	314	314	All	Other	All
80	8	311	311	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
81	40	300	300	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
82	11	297	297	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
83	41	297	297	All/organelle/plastid	Other	All/organelle/plastid
84	8	296	296	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
85	3	296	296	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
86	42	285	285	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
87	43	285	285	All/organelle/plastid	Other	All/organelle/plastid
88	44	285	285	All/organelle/plastid	Other	All/organelle/plastid
89	45	283	283	All/organelle/plastid	Other	All/organelle/plastid
90	8	282	282	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
91	46	278	278	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
92	47	272	272	All	Other	All
93	1	271	271	All/organelle/plastid	Other	All/organelle/plastid
94	48	271	271	All/organelle/plastid	Other	All/organelle/plastid
95	49	270	270	All	Other	All
96	1	268	268	All/organelle/plastid	Other	All/organelle/plastid
97	50	267	267	All/organelle/plastid	Other	All/organelle/plastid
98	51	256	256	All/organelle/plastid	Other	All/organelle/plastid
99	52	252	252	All	Other	All
100	53	250	250	All/organelle/plastid	Other	All/organelle/plastid
101	54	249	249	All	Other	All
102	13	247	247	All	Other	All
103	36	247	247	All	Other	All
104	55	245	245	All	Other	All
105	3	238	238	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
106	56	238	238	All/organelle/plastid	Other	All/organelle/plastid
107	7	236	236	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
108	57	235	235	All	Other	All
109	58	235	235	All/organelle/plastid	Other	All/organelle/plastid
110	59	234	234	All/organelle/plastid	Other	All/organelle/plastid
111	3	229	229	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
112	60	229	229	All/organelle/plastid	Other	All/organelle/plastid
113	61	228	228	All/organelle/plastid	Other	All/organelle/plastid
114	62	227	227	All	Other	All
115	63	227	227	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
116	64	224	224	All	Other	All
117	3	223	223	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
118	65	223	223	All/organelle/plastid	Other	All/organelle/plastid
119	66	222	222	All/organelle/plastid	Other	All/organelle/plastid
120	67	213	213	All	Other	All
121	68	211	211	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
122	69	208	208	All/organelle/plastid	Other	All/organelle/plastid
123	70	205	205	All	Other	All
124	71	205	205	All	Other	All
125	72	204	204	All	Other	All
126	73	201	201	All/organelle/plastid	Other	All/organelle/plastid
127	74	201	201	All/organelle/plastid	Other	All/organelle/plastid
128	75	196	196	All	Other	All
129	25	192	192	All	Other	All
130	76	187	187	All	Other	All
131	77	186	186	All	Other	All
132	78	185	185	All/organelle/plastid	Other	All/organelle/plastid
133	21	185	185	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
134	79	183	183	All	Other	All
135	4	179	179	All/repeat/mobile_element/Class_II	Other	All/repeat/mobile_element/Class_II
136	1	176	176	All/organelle/plastid	Other	All/organelle/plastid
137	80	175	175	All/organelle/plastid	Other	All/organelle/plastid
138	81	174	174	All	Other	All
139	82	174	174	All	Other	All
140	83	173	173	All	Other	All
141	23	173	173	All	Other	All
142	84	169	169	All/organelle/plastid	Other	All/organelle/plastid
143	85	168	168	All/organelle/plastid	Other	All/organelle/plastid
144	86	167	167	All	Other	All
145	87	166	166	All/organelle/plastid	Other	All/organelle/plastid
146	88	165	165	All	Other	All
147	9	163	163	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
148	89	161	161	All	Putative LTR elements	All
149	90	156	156	All	Other	All
150	91	156	156	All	Other	All
151	92	152	152	All	Other	All
152	93	148	148	All/organelle/plastid	Other	All/organelle/plastid
153	94	147	147	All/organelle/plastid	Other	All/organelle/plastid
154	95	146	146	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
155	96	144	144	All	Other	All
156	97	143	143	All	Other	All
157	98	143	143	All	Other	All
158	27	135	135	All	Other	All
159	99	134	134	All/organelle/plastid	Other	All/organelle/plastid
160	5	133	133	All	Other	All
161	100	130	130	All	Other	All
162	15	129	129	All	Other	All
163	101	129	129	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
164	102	127	127	All/organelle/plastid	Other	All/organelle/plastid
165	103	125	125	All	Other	All
166	104	123	123	All	Other	All
167	105	122	122	All	Other	All
168	106	122	122	All	Other	All
169	107	120	120	All/organelle/plastid	Other	All/organelle/plastid
170	108	114	114	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
171	109	114	114	All	Other	All
172	110	110	110	All	Other	All
173	111	109	109	All	Other	All
174	112	106	106	All	Other	All
175	113	105	105	All	Other	All
176	114	104	104	All	Other	All
177	14	104	104	All	Other	All
178	115	103	103	All	Other	All
179	116	101	101	All/organelle/plastid	Other	All/organelle/plastid
180	117	101	101	All/organelle/plastid	Other	All/organelle/plastid
181	118	100	100	All/organelle/plastid	Other	All/organelle/plastid
182	119	100	100	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
183	120	100	100	All	Other	All
184	121	99	99	All	Other	All
185	1	98	98	All/organelle/plastid	Other	All/organelle/plastid
186	36	97	97	All	Other	All
187	122	93	93	All	Other	All
188	123	88	88	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
189	28	87	87	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
190	124	86	86	All/organelle/plastid	Other	All/organelle/plastid
191	125	85	85	All	Other	All
192	126	84	84	All/organelle/plastid	Other	All/organelle/plastid
193	127	83	83	All	Other	All
194	128	81	81	All	Other	All
195	129	81	81	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
196	130	80	80	All/organelle/plastid	Other	All/organelle/plastid
197	131	79	79	All	Other	All
198	132	79	79	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
199	133	77	77	All	Other	All
200	134	76	76	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
201	135	76	76	All	Other	All
202	136	65	65	All	Other	All
203	137	62	62	All	Other	All
204	138	61	61	All	Other	All
205	3	60	60	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
206	139	60	60	All/organelle/plastid	Other	All/organelle/plastid
207	140	58	58	All/repeat/rDNA/5S_rDNA	rDNA	All/repeat/rDNA/5S_rDNA
208	141	58	58	All	Other	All
209	142	57	57	All	Other	All
210	143	56	56	All	Other	All
211	144	55	55	All/organelle/plastid	Other	All/organelle/plastid
212	145	53	53	All	Other	All
213	146	52	52	All	Other	All
214	147	51	51	All	Other	All
215	148	50	50	All	Other	All
216	149	50	50	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
217	150	49	49	All	Other	All
218	151	48	48	All	Other	All
219	152	48	48	All	Other	All
220	153	47	47	All	Other	All
221	154	47	47	All/organelle/plastid	Other	All/organelle/plastid
222	155	45	45	All	Other	All
223	156	44	44	All	Other	All
224	157	44	44	All	Other	All
225	158	43	43	All	Other	All
226	159	43	43	All	Other	All
227	160	43	43	All	Other	All
228	161	43	43	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
229	162	42	42	All	Other	All
230	163	42	42	All	Other	All
231	164	42	42	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
232	165	42	42	All	Other	All
233	166	41	41	All	Other	All
234	167	41	41	All	Other	All
235	168	40	40	All	Other	All
236	169	40	40	All	Other	All
237	170	39	39	All/organelle/plastid	Other	All/organelle/plastid
238	171	39	39	All	Other	All
239	172	39	39	All	Other	All
240	173	39	39	All	Other	All
241	174	38	38	All	Other	All
242	175	38	38	All	Other	All
243	176	38	38	All	Other	All
244	177	38	38	All	Other	All
245	178	38	38	All	Other	All
246	179	38	38	All/organelle/mitochondria	Other	All/organelle/mitochondria
247	2	37	37	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
248	180	37	37	All	Other	All
249	181	36	36	All	Other	All
250	182	36	36	All	Other	All
251	183	36	36	All	Other	All
252	184	36	36	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
253	185	35	35	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
254	186	35	35	All	Other	All
255	187	35	35	All	Other	All
256	188	34	34	All	Other	All
257	189	34	34	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
258	190	34	34	All/organelle/plastid	Other	All/organelle/plastid
259	191	34	34	All	Other	All
260	192	33	33	All	Other	All
261	193	33	33	All	Other	All
262	194	32	32	All	Other	All
263	195	32	32	All/organelle/plastid	Other	All/organelle/plastid
264	196	32	32	All	Other	All
265	197	31	31	All	Other	All
266	198	31	31	All	Other	All
267	199	30	30	All	Other	All
268	200	30	30	All	Other	All
269	201	30	30	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
270	202	29	29	All	Other	All
271	203	29	29	All	Other	All
272	204	29	29	All	Other	All
273	205	28	28	All	Other	All
